STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97287.1Conserved protein belonging to the DUF1680 family protein; Localized in the cytoplasm. (656 aa)    
Predicted Functional Partners:
CAZ97288.1
The major facilitator superfamily (MFS) transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients; Contains 12 transmembrane segments; Localized in the cytoplasmic membrane; Family membership.
 
     0.701
CAZ96463.1
Conserved hypothetical protein; Shows a weak similarity with the glycoside hydrolases of the family 42 (GH42); Seems to be a lipoprotein with a signal peptide cleaved between residues 15 and 16; Putatively localised in the outer membrane.
 
    0.699
cgiA2
Iota-carrageenase, family GH82; The Iota-carrageenases hydrolyse the 1,4-beta-D-galactosidic linkages in the iota-carrgeenan giving the tetramer as the predominant product; Belongs to the family 82 of glycoside hydrolases (GH82); Signal peptide of lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; High confidence in function and specificity.
  
     0.623
CAZ97289.1
Conserved hypothetical membrane protein; Protein containing a domain of unknown function DUF1680 predicted to be a possible new family of glycoside hydrolases of unknown specificity; Putative lipoprotein signal peptide cleaved between the residues 16 and 17; Possibly localized in the outer membrane; Family membership.
 
    
0.563
idsA3
Iduronate-2-sulfatase, family S1-7; Iduronate-2-sulfatase, called also chondroitinsulfatase is involved in the glycosaminoglycan degradation. It hydrolyzes the 2-sulfate groups from non-reducing-terminal iduronic acid residues in dermatan sulfate, heparan sulfate and heparin; Belongs to the family 1 of sulfatases (S1: formylglycine-dependent sulfatases), subfamily 7; Lipoprotein with a signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; High confidence in function and specificity.
 
     0.550
rhaT1
L-rhamnose/proton symporter is involved in the uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell. Can also transport L-mannose and L-xylose, but at reduced rates. Contains ten transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
     0.528
bgaD
Beta-galactosidase, family GH2; Enzyme belonging to the family 2 of glycoside hydrolases (GH2) which catalyzes the hydrolysis of the beta-1,4 linkage at the terminal non-reducing of beta-D-galactosides, releasing a beta-D-galactose residue; Signal peptide cleaved between residues 22 and 23; Localized in the periplasmic space; High confidence in function and specificity.
 
     0.489
CAZ97286.1
Conserved protein belonging to the DUF1680 family protein; Signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein.
 
    
0.487
cgkA
Kappa-carrageenase, family GH16; Kappa-carrageenase Hydrolyses the 1,4-beta-D-galactosidic linkages in kappa-carrageenan giving the tetramer as the predominant product; Modular enzyme containing a N-terminal catalytic domain belonging to the family 16 of the glycoside hydrolases, a central Carbohydrate Binding Module of the family CBM16 and a C-terminal domain of unknown function; Signal peptide cleaved between the residues 29 and 30; Localized in the periplasmic space and possibly secreted in the outside medium; High confidence in function and specificity.
  
     0.486
CAZ97284.1
Sulfatase, family S1-19; The family 1 of sulfatases is composed of enzymes that require the posttranslational oxidation of a conserved cysteine (or serine) to a catalytic formylglycine to hydrolyze various sulfate ester substrates; Belongs to the family 1 of sulfatases (S1: formylglycine-dependent sulfatases), subfamily 19; Contains a N-terminal transmembrane segment; Localized in the cytoplasmic membrane; Family membership.
 
     0.462
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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