STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoDGalactonate dehydratase catalyzes the first step of the D-galactonate catabolism converting the D-galactonate to 2-dehydro-3-deoxy-D-galactonate; Contains a N-terminal Enolase-like fold and a C-terminal TIM alpha/beta barrel fold; Belongs to the Mandelate racemase/muconate lactonizing enzyme family; Localized in the cytoplasm; High confidence in function and specificity. (388 aa)    
Predicted Functional Partners:
dgoK
2-Dehydro-3-deoxygalactonokinase catalyzes the second step in D-galactonate degradation: ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate. Localized in the cytoplasm; High confidence in function and specificity.
 
 0.961
dgoA
2-Dehydro-3-deoxy-6-phosphogalactonate aldolase catalyzes the third step of the D-galactonate catabolism: 2-dehydro-3-deoxy-D-galactonate 6-phosphate = pyruvate + D-glyceraldehyde 3-phosphate. Belongs to the class I aldolase whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. Localized in the cytoplasm; High confidence in function and specificity.
 
   
 0.841
aldA
Lactaldehyde dehydrogenase catalyze the NAD-dependent oxidation of lactaldehyde into lactate. This protein is a tetramer. AldA is involved in the catabolism of L-fucose and L-rhamnose and is induced by these sugars. In aerobic condition, the lactaldehyde is produced by the cleavage of L-fucose or L-rhamnose; Belongs to the aldehyde dehydrogenase fold family; Localized in the cytoplasm; High confidence in function and specificity.
 
   
 0.805
rhaT1
L-rhamnose/proton symporter is involved in the uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell. Can also transport L-mannose and L-xylose, but at reduced rates. Contains ten transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
     0.730
CAZ97291.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 27 and 28; Localized in the periplasmic space; Conserved hypothetical protein.
  
  
 0.675
CAZ97290.1
Sulfatase, family S1-17; The family 1 of sulfatases is composed of enzymes that require the posttranslational oxidation of a conserved cysteine (or serine) to a catalytic formylglycine to hydrolyze various sulfate ester substrates; Belongs to the family 1 of sulfatases (S1: formylglycine-dependent sulfatases), subfamily 17; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Family membership.
       0.498
CAZ97289.1
Conserved hypothetical membrane protein; Protein containing a domain of unknown function DUF1680 predicted to be a possible new family of glycoside hydrolases of unknown specificity; Putative lipoprotein signal peptide cleaved between the residues 16 and 17; Possibly localized in the outer membrane; Family membership.
 
     0.454
gntT3
High-affinity gluconate transporter; GntT is part of the gluconate utilization system Gnt-I. It is a permease responsible for high-affinity intake of gluconate; Contains twelve transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
       0.437
CAZ97287.1
Conserved protein belonging to the DUF1680 family protein; Localized in the cytoplasm.
 
     0.431
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.