STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94392.1Galactonate dehydratase converts the D-galactonate to 2-dehydro-3-deoxy-D-galactonate; Contains a N-terminal domain with a Enolase N-terminal domain-like fold and a C-terminal TIM alpha/beta barrel fold; Belongs to the Mandelate racemase/muconate lactonizing enzyme family; Localized in the cytoplasm; High confidence in function and specificity. (386 aa)    
Predicted Functional Partners:
dgoK
2-Dehydro-3-deoxygalactonokinase catalyzes the second step in D-galactonate degradation: ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate. Localized in the cytoplasm; High confidence in function and specificity.
 
 0.936
dgoD-2
Galactonate dehydratase is involved in the galactose metabolism. It converts the D-galactonate to 2-dehydro-3-deoxy-D-galactonate; Contains a N-terminal Enolase N-terminal domain-like fold and a C-terminal TIM alpha/beta barrel fold; Belongs to the Mandelate racemase/muconate lactonizing enzyme family; Localized in the cytoplasm; High confidence in function and specificity.
  
  
 
0.927
dgoD-3
Galactonate dehydratase, involved in the galactose metabolism, converts the D-galactonate to 2-dehydro-3-deoxy-D-galactonate; These enzymes feature a N-terminal domain with a Enolase N-terminal domain-like fold and a C-terminal TIM alpha/beta barrel fold; Belongs to the Mandelate racemase/muconate lactonizing enzyme family; Localized in the cytoplas; High confidence in function and specificity.
  
  
 
0.923
CAZ94391.1
Gluconolactonase or Aldonolactonase hydrolyzes the glyconolactones formed by oxidoreductases acting on various aldohexosaccharides. It hydrolyzes the D-glucono-1,5-lactone to gluconic acid and can act on a wide range of hexono-1,5-lactones; Localized in the cytoplasm; High confidence in function and specificity.
 
   
 0.815
CAZ94390.1
Belongs to the short-chain dehydrogenases/reductases (SDR) family, Glucose/ribitol dehydrogenase subfamily; Most dehydrogenases possess at least 2 domains, the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis; Localized in the cytoplasm; Family membership.
 
     0.765
rraA2
Dimethylmenaquinone methyltransferase; Regulator of ribonuclease activity is a general modulator of RNA abundance which inhibits the endonuclease activity of the RNase E and thereby leads to increase the half-life of RNAs; Contains a Demethylmenaquinone methyltransferase domain; Localized in the cytoplasm; Conserved hypothetical protein.
 
  
 0.721
CAZ94389.1
Alpha-glucosidase, family GH97; Alpha-glucosidases catalyse the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. Involved in carbohydrate metabolism, notably in starch degradation; Belongs to the family 97 of glycoside hydrolases (GH97); Lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the cytoplasmic or outer membrane or both; High confidence in function and specificity.
       0.576
CAZ94388.1
RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership.
       0.479
CAZ94394.1
The AraC-type transcriptional regulators are usually involved in the positive regulation of catabolic, metabolic and transport operons; Contains a C-terminal AraC-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a N-terminal domain presumed to interact with effector molecules and may be involved in dimerization; Localized in the cytoplasm; Family membership.
       0.440
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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