STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97379.1Conserved hypothetical membrane protein; Contains nine transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein. (274 aa)    
Predicted Functional Partners:
CAZ98757.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 23 and 24; Putatively localized in the outer membrane; Family membership.
  
     0.706
CAZ98756.1
Glycoside hydrolase, family GH115; Glycoside hydrolases hydrolyse the glycosidic bond between two or more carbohydrates or between a carbohydrate and a non-carbohydrate moiety; Belongs to the family 115 of the glycoside hydrolases; Signal peptide cleaved between the residues 26 and 27; Putatively localized in the periplasmic space; Conserved hypothetical protein.
  
     0.705
CAZ98758.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (23-97) and the Plug module (113-236) acting as a channel gate; The signal peptide is cleaved between the residues 21 and 22; Family membership.
  
     0.595
CAZ97579.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (50-125) and the Plug module (141-250) acting as a channel gate; The signal peptide is cleaved between the residues 34 and 35; Family membership.
  
     0.593
CAZ97578.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 24 and 25; Possibly localized in the outer membrane; Family membership.
  
     0.557
CAZ97380.1
Putative protein.
       0.524
porD
Beta-porphyranase D, family GH16; Cleaves the sulfated polysaccharide porphyran at the (1->4) linkages between beta-D-galactopyranose and alpha-L-galactopyranose-6- sulfate, forming mostly the disaccharide alpha-L-galactopyranose-6- sulfate-(1->3)-beta-D-galactose.
  
     0.517
CAZ95611.1
Non-peptidase protein, Family M29; This protein belongs to the family 29 of the metallopeptidases, but lacks some of the catalytic or metal-binding residues; Localized in the cytoplasm; Function unclear.
  
     0.515
CAZ97381.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (24-111) and the Plug module (125-224) acting as a channel gate; The signal peptide is cleaved between the residues 21 and 22; Family membership.
 
     0.505
CAZ98581.1
Protein belonging to the OsmC family consisting of proteins involved in the stress and detoxification process; Localized in the cytoplasm; Family membership.
  
     0.497
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.