STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94399.1FAD dependent oxidoreductase; Flavoprotein that contains a N-terminal FAD binding domain; Belongs to the FAD/NAD(P)-binding Rossmann fold Superfamily, pyridine nucleotide-disulfide oxidoreductase family; Possible lipoprotein with a signal peptide cleaved between the residues 25 and 26; localized in the cytoplasmic membrane; Function unclear. (444 aa)    
Predicted Functional Partners:
CAZ94398.1
Sugar kinase; Enzymes that catalyzes the phosphorylation of sugars from ATP; Contains a transmembrane segment in the middle part of protein; Belongs to the ROK family; Seems localized in the cytoplasmic membrane; Family membership.
       0.766
CAZ94400.1
Belongs to the short-chain dehydrogenases/reductases (SDR) family, Glucose/ribitol dehydrogenase subfamily; Most dehydrogenases possess at least 2 domains, the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis; Localized in the cytoplasm; Family membership.
 
   0.765
CAZ94402.1
Transcriptional regulator involved in the repression and/or the positive regulation of genes encoding for enzymes; Contains an N-terminal HTH domain of GntR-like bacterial transcriptional regulators, involved in the binding of the protein to the operator sequences in the DNA and a C-terminal UTRA domain that modulates activity of transcription regulator in response to binding small molecules; Localized in the cytoplasm; Family membership.
 
     0.653
CAZ94401.1
Conserved hypothetical protein; Localized in the cytoplasm.
 
     0.646
CAZ94397.1
Creatinase family protein; Conserved protein belonging to the creatine amidohydrolase family; Localized in the cytoplasm; Family membership.
 
     0.492
etfB
Electron transfer flavoprotein, beta subunit; The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various dehydrogenases. In Bacteria, ETFs are produced under specific growth conditions, receiving electrons only from the oxidation of specific substrates. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and an AMP molecule. EtfB codes the beta subunit that binds the AMP molecule; Localized in the cytoplasm; High confidence in function and specificity.
  
 
 0.445
etfA
Electron transfer flavoprotein, alpha subunit; The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various dehydrogenases. In Bacteria, ETFs are produced under specific growth conditions, receiving electrons only from the oxidation of specific substrates. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and an AMP molecule. EtfA codes the alpha subunit that participate, with the alpha subunit, to the binding of the FAD molecule; Localized in the cytoplasm; High confidence in function and specificity.
  
 
 0.433
CAZ94404.1
RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership.
  
    0.406
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.