STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97443.1Conserved hypothetical protein; Signal peptide cleaved between the residues 18 and 19; Localized in the periplasmic space. (261 aa)    
Predicted Functional Partners:
CAZ97442.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations. Contains a carboxypeptidase regulatory domain (21-107) and the Plug module (120-210) acting as a channel gate. The signal peptide is cleaved between the residues 16 and 17; Family membership.
 
     0.950
CAZ96840.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 23 and 24; Localized in the periplasmic space; Conserved hypothetical protein.
 
     0.722
CAZ96841.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (29-112) and the Plug module (acting as a channel gate; The signal peptide is cleaved between the residues 25 and 26; Family membership.
 
     0.710
CAZ94437.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (31-104) and the Plug module (120-230) acting as a channel gate; The signal peptide is cleaved between the residues 27 and 28; Family membership.
  
     0.551
CAZ97444.1
Putative protein.
       0.526
CAZ94438.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding. This sequence corresponds to the N-terminal domain found in the proteins belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 25 and 26; Probably localized in the outer membrane; Family membership.
  
     0.504
CAZ97441.1
Putative protein.
       0.479
phoA
Alkaline phosphatase is a zinc and magnesium-containing metalloenzyme which hydrolyzes phosphate esters, optimally at high pH; Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymic activity; Signal peptide cleaved between the residues 26 and 27; Localized in the periplasmic space; High confidence in function and specificity.
  
     0.438
CAZ97495.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the cytoplasmic membrane; Family membership.
  
     0.424
CAZ97494.1
TonB-dependent receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (25-98) and the Plug module (114-221) acting as a channel gate; The signal peptide is cleaved between the residues 22 and 23; Family membership.
  
     0.416
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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