STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97488.1Sodium/solute symporter; Sodium/substrate symport is a mechanism of solute transport across cytoplasmic membranes cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient; Contains 13 transmembrane helices; Localized in the cytoplasmic membrane; Specificity unclear; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (492 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase, induced by N-acetylglucosamine, hydrolyses the N-acetyl-D-glucosamine 6-phosphate to D-glucosamine 6-phosphate in the N-acetylglucosamine utilization pathway; Belongs to the Amidohydrolase family; Localized in the cytoplasm; High confidence in function and specificity.
    0.969
nagB1
Glucosamine-6-phosphate deaminase or Glucosamine-6-phosphate isomerase catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion in the N-acetylglucosamine (GlcNAC) utilization pathway; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family; Localized in the cytoplasm; High confidence in function and specificity.
    0.935
CAZ97487.1
Glycoside hydrolase, family GH20; Glycoside hydrolases hydrolyse the glycosidic bond between two or more carbohydrates or between a carbohydrate and a non-carbohydrate moiety. Belongs to the family 20 of the glycoside hydrolases. Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in the family GH20. Features a signal peptide cleaved between residues 27 and 28. Localized in the periplasm; Specificity unclear.
 
     0.899
CAZ97484.1
Fasciclin family protein; Protein containing an N-terminal FAS1 (or BIgH3) module. In eucariotic cells, this module is involved in the process of cell adhesion. Contains a signal peptide cleaved between the residues 24 and 25. Localized in the outer membrane; Hypothetical protein.
 
     0.847
nahA3
Beta-N-acetylhexosaminidase, family GH20; Beta-N-acetylhexosaminidase catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base; Belongs to the family 20 of the glycoside hydrolases (GH20); Signal peptide cleaved between residues 22 and 23; Localized in the periplasmic space; High confidence in function and specificity.
 
     0.840
CAZ97483.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer;Contains a lipoprotein signal peptide cleaved between the residues 18 and 19; Probably localized in the outer membrane; Family membership.
 
     0.801
CAZ97482.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (40-114) and the Plug module (131-254) acting as a channel gate; The signal peptide is cleaved between the residues 35 and 36; Family membership.
 
     0.751
CAZ98670.1
CarD is involved in carbapenem antibiotic biosynthesis, but its exact function is unknown. Belongs to the proline dehydrogenase family and likely binds a FAD as a cofactor. Localized in the cytoplasm; Function unclear.
  
  
 0.571
cstA
CstA is induced during carbon starvation and is positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein complex. It is involved in peptide utilization; Contains 13 transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
  
    0.485
CAZ97485.1
Glycoside hydrolase, family GH16; Glycoside hydrolases hydrolyse the glycosidic bond between two or more carbohydrates or between a carbohydrate and a non-carbohydrate moiety. Belongs to the family 16 of the glycoside hydrolases. Contains a signal peptide of lipoprotein cleaved between the residues 30 and 31. Localized in the outer membrane; Specificity unclear.
       0.432
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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