close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94410.1Modular protein containing a N-terminal domain adopting a parallel beta-helix fold and a C-terminal carbohydrate binding module of the family 16 (CBM16). The N-terminal domain is distantly related to the polysaccharide lyases of the family 9 (PL9). Features a signal peptide cleaved between residues 29 and 30. Localized in the periplasm; Specificity unclear. (792 aa)    
Predicted Functional Partners:
CAZ94408.1
Beta-helix fold protein; This conserved protein likely adopts a right handed parallel beta-helix fold. Features an uncleaved signal peptide. Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
    
0.769
CAZ94409.1
Sulfatase, family S1-16; The family 1 of sulfatases is composed of enzymes that require the posttranslational oxidation of a conserved cysteine (or serine) to a catalytic formylglycine to hydrolyze various sulfate ester substrates; Belongs to the family 1 of sulfatases (S1: formylglycine-dependent sulfatases), subfamily 16; Putative lipoprotein with a signal peptide cleaved between the residues 18 and 19. Possibly localized in the outer membrane; Family membership.
       0.762
cgkA
Kappa-carrageenase, family GH16; Kappa-carrageenase Hydrolyses the 1,4-beta-D-galactosidic linkages in kappa-carrageenan giving the tetramer as the predominant product; Modular enzyme containing a N-terminal catalytic domain belonging to the family 16 of the glycoside hydrolases, a central Carbohydrate Binding Module of the family CBM16 and a C-terminal domain of unknown function; Signal peptide cleaved between the residues 29 and 30; Localized in the periplasmic space and possibly secreted in the outside medium; High confidence in function and specificity.
  
     0.744
porE
Beta-porphyranase E, family GH16; Cleaves the sulfated polysaccharide porphyran at the (1->4) linkages between beta-D-galactopyranose and alpha-L-galactopyranose-6- sulfate, forming mostly the disaccharide alpha-L-galactopyranose-6- sulfate-(1->3)-beta-D-galactose.
  
     0.719
CAZ96463.1
Conserved hypothetical protein; Shows a weak similarity with the glycoside hydrolases of the family 42 (GH42); Seems to be a lipoprotein with a signal peptide cleaved between residues 15 and 16; Putatively localised in the outer membrane.
  
     0.718
porD
Beta-porphyranase D, family GH16; Cleaves the sulfated polysaccharide porphyran at the (1->4) linkages between beta-D-galactopyranose and alpha-L-galactopyranose-6- sulfate, forming mostly the disaccharide alpha-L-galactopyranose-6- sulfate-(1->3)-beta-D-galactose.
  
     0.715
agaA
Beta-agarase A, family GH16; Cleaves the beta-1,4-linkages between beta-D-galactose and alpha-L-3,6-anhydro-galactose residues in agarose. Cleaves agarose in a random manner with retention of the anomeric-bond configuration, producing beta-anomers that give rise progressively to alpha-anomers when mutarotation takes place.
  
     0.711
CAZ94413.1
Beta-helix fold protein; This conserved protein likely adopts a right handed parallel beta-helix fold. Features a signal peptide cleaved between the residues 32 and 33. Localized in the periplasm; Conserved hypothetical protein.
 
     0.702
porB
Beta-porphyranase B, family GH16; Cleaves the sulfated polysaccharide porphyran at the (1->4) linkages between beta-D-galactopyranose and alpha-L-galactopyranose-6- sulfate, forming mostly the disaccharide alpha-L-galactopyranose-6- sulfate-(1->3)-beta-D-galactose. Some longer oligosaccharides of even number of residues are also observed. Inactive on the non-sulfated agarose portion of the porphyran backbone. In contrast to PorA, tolerates the presence of 3-6-anhydro-L-galactose in subsite -2.
  
     0.695
CAZ94278.1
Conserved hypothetical protein; Contains a C-terminal domain of unknown function (100 aa) and a lipoprotein signal peptide cleaved between the residues 16 and 17; Localized in the outer membrane; Belongs to the glycosyl hydrolase 43 family.
 
    0.670
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.