STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97550.1Protein containing six Kelch repeats. The kelch motif forms a beta sheet and several of these sheets associate to form a beta propeller structure; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 23 and 24; Localized in the outer membrane; Family membership. (326 aa)    
Predicted Functional Partners:
CAZ94188.1
Bacterial surface antigen; Conserved protein belonging to the bacterial surface antigen family, which includes D15 antigen from H. influenzae, OMA87 from P.multocida, OMP85 from N. meningitidis and N.gonorrhoeae. Features a signal peptide cleaved between the residues 22 and 23. Predicted to be Localized in the outer membrane; Function unclear.
 
 
 0.518
CAZ96427.1
O-linked N-acetylglucosaminyltransferase, family GT41; Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide. Contains Tetratricopeptide repeats; Seems to have an uncleavable N-terminal signal sequence; Localized in the cytoplasmic membrane; Specificity unclear.
  
    0.481
CAZ97548.1
Conserved hypothetical protein including an N-terminal region rich in glycine, reminiscent of the collagen triple helix repeats (GxxG). Contains a prokaryotic lipoprotein signal peptide cleaved between tyhe residues 22 and 23; Localized in the outer membrane; Function unclear.
 
     0.450
CAZ96608.1
This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership.
  
 
 0.417
CAZ98461.1
Beta-helix fold protein; Conserved protein adopting a parallel beta-helix fold. Features a signal peptide cleaved between the residues 27 and 28. Localized in the periplasm; Conserved hypothetical protein.
  
     0.417
CAZ95499.1
Patatin-like phospholipase; Conserved protein containing a N-terminal Patatin-like phospholipase domain and a C-terminal domain of unknown function; Contains a signal peptide cleaved between the residues 32 and 33; Localized in the periplasmic space; Family membership.
  
 
 0.406
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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