STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
afcA2Alpha-L-fucosidase, family GH95; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 95 of the glycoside hydrolases (GH95); Features a lipoprotein signal peptide cleaved between the residues 23 and 24; Localized in the outer membrane; High confidence in function and specificity. (791 aa)    
Predicted Functional Partners:
fucA2
Alpha-L-fucosidase, family GH29; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 29 of glycoside hydrolases (GH29); Signal peptide cleaved between the residue 24 and 25; Localized in the outer membrane; High confidence in function and specificity.
 
    0.843
fucA3
Alpha-L-fucosidase, family GH29; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 29 of glycoside hydrolases (GH29); Localized in the cytoplasm; High confidence in function and specificity.
    0.830
alfA1
Alpha-L-fucosidase, family GH29; Modular protein that consists of an N-terminal alpha-L-fucosidase module belonging to the family 29 of glycoside hydrolases (GH29), responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside and a C-terminal domain that could be involved in the binding to specific ligands such as carbohydrate or lipids substrates; Signal peptide cleaved between the residue 22 and 23; Localized in the periplasmic space; High confidence in function and specificity.
    0.820
CAZ94413.1
Beta-helix fold protein; This conserved protein likely adopts a right handed parallel beta-helix fold. Features a signal peptide cleaved between the residues 32 and 33. Localized in the periplasm; Conserved hypothetical protein.
 
     0.819
fucA1
Alpha-L-fucosidase, family GH29; The alpha-L-fucosidase is responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside; Belongs to the family 29 of glycoside hydrolases (GH29); Signal peptide cleaved between the residue 25 and 26; Localized in the periplasmic space; High confidence in function and specificity.
 
    0.807
xarB1
Xylosidase/arabinosidase, family GH3; XarB catalyzes the hydrolysis of terminal, non-reducing beta-D-xylose residues (or L-arabinose residues) with release of beta-D-xylose (or alpha-L-arabinose). This bifunctional enzyme belongs to the family 3 of the glycoside hydrolases (GH3); Contains a signal peptide cleaved between the residues 24 and 25; Localized in the periplasm; High confidence in function and specificity.
 
    0.777
alfA3
Alpha-L-fucosidase, family GH29; Modular protein that consists of an N-terminal alpha-L-fucosidase module belonging to the family 29 of glycoside hydrolases (GH29), responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside and a C-terminal domain that could be involved in the binding to specific ligands such as carbohydrate or lipids substrates; Signal peptide cleaved between the residue 18 and 19; Localized in the periplasmic space; High confidence in function and specificity.
 
    0.736
alfaA2
Alpha-L-fucosidase, family GH29; Modular protein that consists of an N-terminal alpha-L-fucosidase module belonging to the family 29 of glycoside hydrolases (GH29), responsible for hydrolyzing of alpha-1,6-linked fucose joined to an alpha-L-fucoside and a C-terminal domain of two hundred residues that could be involved in the binding to specific ligands such as carbohydrate or lipids substrates; Signal peptide cleaved between the residue 19 and 20; Localized in the outer membrane; High confidence in function and specificity.
 
    0.730
xarB2
Xylosidase/arabinosidase, family GH3; XarB catalyzes the hydrolysis of terminal, non-reducing beta-D-xylose residues (or L-arabinose residues) with release of beta-D-xylose (or alpha-L-arabinose). This bifunctional enzyme belongs to the family 3 of the glycoside hydrolases. Features an uncleaved signal peptide. Localized in the cytoplasmic membrane; High confidence in function and specificity.
    0.727
engA
Endoglucanase, family GH5; Endoglucanase catalyzes the endohydrolysis of the 1, 4-beta-D-glucosidic linkages in lichenan, cereal beta-D-glucans and carboxymethyl-cellulose and the 1,4-beta-D-xylosidic linkages in xylans. This enzyme is highly; Specificity unclear; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
   0.531
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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