STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97579.1TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (50-125) and the Plug module (141-250) acting as a channel gate; The signal peptide is cleaved between the residues 34 and 35; Family membership. (1104 aa)    
Predicted Functional Partners:
CAZ97578.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 24 and 25; Possibly localized in the outer membrane; Family membership.
     0.932
CAZ97588.1
Beta-helix fold protein; Protein that likely adopts a right handed parallel beta-helix fold; Contains a C-terminal PDZ domain responsible of protein-protein interaction by binding either the carboxyl-terminal sequences of proteins or internal peptide sequences suggesting that it could be a signaling protein; Prokaryotic lipoprotein signal peptide cleaved between 19 and 20; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.743
CAZ98756.1
Glycoside hydrolase, family GH115; Glycoside hydrolases hydrolyse the glycosidic bond between two or more carbohydrates or between a carbohydrate and a non-carbohydrate moiety; Belongs to the family 115 of the glycoside hydrolases; Signal peptide cleaved between the residues 26 and 27; Putatively localized in the periplasmic space; Conserved hypothetical protein.
  
     0.738
CAZ98757.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 23 and 24; Putatively localized in the outer membrane; Family membership.
  
     0.736
CAZ97577.1
The sensor proteins consist of a sensing beta-propeller fold periplasmic domain, variable in sequence, reflective of the many different environmental signals, and of a cytoplasmic part composed of a histidine kinase domain, a response regulator receiver domain and a response regulator effector domain (here a C-terminal AraC- type HTH domain); Contains one trans membrane segment; Localized in the cytoplasmic membrane; Family membership.
  
     0.727
CAZ97599.1
Sulfatase, family S1-28; The family 1 of sulfatases is composed of enzymes that require the posttranslational oxidation of a conserved cysteine (or serine) to a catalytic formylglycine to hydrolyze various sulfate ester substrates; Belongs to the family 1 of sulfatases (S1: formylglycine-dependent sulfatases), subfamily 28; Putative lipoprotein with a signal peptide cleaved between the residues 20 and 21; Possibly localized in the outer membrane; Family membership.
  
     0.716
CAZ97439.1
Probably a cytoplasmic protein.
  
     0.707
CAZ97646.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 19 and 20; Putatively localized in the outer membrane but the determination of the membrane identity for the protein localization is not clear; Family membership.
 
     0.694
CAZ97744.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 19 and 20; Putatively localized in the outer membrane; Family membership.
  
     0.684
CAZ97887.1
Conserved hypothetical protein; Contains an N-terminal haloacid dehalogenase (HAD) domain; Localized in the cytoplasm.
  
     0.669
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.