STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97650.1SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 21 and 22; Probably localized in the outer membrane; Family membership. (519 aa)    
Predicted Functional Partners:
CAZ97649.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (here, possibly sulphated sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; This sequence does not contain of carboxypeptidase regulatory domain. The Plug module (111- 221) acts as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership.
 
     0.943
CAZ97605.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (here, possibly sulphated sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (53-126) and the Plug module (142-258) acting as a channel gate; The signal peptide is cleaved between the residues 37 and 38; Family membership.
 
 
   0.792
CAZ94978.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension (Secretin/TonB (STN) domain (67-119)) that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (142-216), and a Plug module (232-356) acting as the channel gate; The signal peptide is cleaved between the residue 21 and 22; Family membership.
 
 
   0.783
CAZ97745.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (22-95) and the Plug module (111-220) acting as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership.
 
 
   0.780
CAZ97679.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 19 and 20; Probably localized in the outer membrane; Family membership.
  
 
   0.765
CAZ97648.1
The sensor proteins consist of a sensing beta-propeller fold periplasmic domain, variable in sequence, reflective of the many different environmental signals, and of a cytoplasmic part composed of a histidine kinase domain, a response regulator receiver domain and a response regulator effector domain (here a C-terminal AraC- type HTH domain); Contains one transmembrane segment; Localized in the cytoplasmic membrane; Family membership.
 
   
 0.754
CAZ96564.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (60-134), a Plug module (150-256) acting as the channel gate; The signal peptide is cleaved between the residue 39 and 40; Family membership.
  
     0.745
CAZ94430.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension that probably interacts with an anti-sigma factor (Secretin/TonB (STN) domain), would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (146-220) and a Plug module (236-371) acting as the channel gate; The signal peptide is cleaved between the residue 27 and 28; Family membership.
 
 
   0.741
CAZ97680.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (32-105) and the Plug module (122-247) acting as a channel gate; The signal peptide is cleaved between the residues 26 and 27; Family membership.
  
 
   0.724
CAZ96301.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (49-123) and the Plug module (139-247) acting as a channel gate; The signal peptide is cleaved between the residues 23 and 24; Family membership.
  
     0.715
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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