STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94429.1SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a Lipocalin signature involved in the transport of small hydrophobic molecules such as steroids, bilins, retinoids, and lipids; Contains a lipoprotein signal peptide cleaved between the residues 20 and 21; Putatively localized in the outer membrane; Family membership. (531 aa)    
Predicted Functional Partners:
CAZ94430.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension that probably interacts with an anti-sigma factor (Secretin/TonB (STN) domain), would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (146-220) and a Plug module (236-371) acting as the channel gate; The signal peptide is cleaved between the residue 27 and 28; Family membership.
 
     0.942
CAZ95109.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (31-104) and the Plug module (120-237) acting as a channel gate; The signal peptide is cleaved between the residues 27 and 28; Family membership.
  
     0.773
CAZ98804.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (27-99) and the Plug module (115-218) acting as a channel gate; The signal peptide is cleaved between the residues 25 and 26; Family membership.
  
     0.772
CAZ98803.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the outer membrane; Family membership.
  
     0.768
CAZ94978.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension (Secretin/TonB (STN) domain (67-119)) that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (142-216), and a Plug module (232-356) acting as the channel gate; The signal peptide is cleaved between the residue 21 and 22; Family membership.
  
     0.766
CAZ96564.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (60-134), a Plug module (150-256) acting as the channel gate; The signal peptide is cleaved between the residue 39 and 40; Family membership.
  
     0.764
CAZ98129.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension (Secretin/TonB (STN) domain (58-108)) that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (128-202), and a Plug module (218-325) acting as the channel gate; The signal peptide is cleaved between the residue 27 and 28; Family membership.
  
     0.754
CAZ97745.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (22-95) and the Plug module (111-220) acting as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership.
  
     0.745
CAZ94428.1
Alpha-glucosidase, family GH97; Alpha-glucosidases catalyse the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. Involved in carbohydrate metabolism, notably in starch degradation; Belongs to the family 97 of glycoside hydrolases (GH97); Lipoprotein signal peptide cleaved between the residues 28 and 29; Localized in the outer membrane; High confidence in function and specificity.
 
     0.727
CAZ94231.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (26-100) and the Plug module (116-221) acting as a channel gate; The signal peptide is cleaved between the residues 23 and 24; Family membership.
  
     0.709
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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