STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97703.1Conserved hypothetical protein; Probably localized in the cytoplasm. (149 aa)    
Predicted Functional Partners:
katA2
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.640
CAZ97696.1
Conserved hypothetical protein; Probably localized in the cytoplasm.
 
     0.596
CAZ97219.1
Conserved hypothetical protein; Putatively localized in the cytoplasmic membrane via a transmembrane segment.
 
    0.575
CAZ96756.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.572
CAZ97702.1
Putative protein.
       0.501
CAZ98561.1
Conserved hypothetical protein; Localized in the cytoplasm.
 
     0.497
topA2
DNA topoisomerase 1B relaxes supercoiled DNA. Modifies DNA topology by introducing ATP-independent reversible enzyme-linked breaks in the DNA phosphodiester backbone. This is accomplished by cleaving one strand of the DNA duplex and passing the intact complementary strand through the nick. Cleaves DNA after CCCTT sequence. This enzyme is closely related to the DNA topoisomerase 1B from Mimivirus; Belongs to the eukaryotic type I topoisomerase family; Localized in the cytoplasm; High confidence in function and specificity.
 
    0.485
CAZ97701.1
Conserved hypothetical membrane protein; Contains three N-terminal transmembrane segments; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.476
CAZ96759.1
CsbD-like protein; CsbD is a bacterial general stress response protein. Its expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear. Localized in the cytoplasm; Function unclear; Belongs to the UPF0337 (CsbD) family.
 
  
 0.443
CAZ96755.1
Conserved hypothetical protein distantly related to the Auxin-responsive GH3-like proteins; Localized in the cytoplasm.
  
     0.423
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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