STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94438.1SusD/RagB family lipoprotein; Protein probably involved in nutrient binding. This sequence corresponds to the N-terminal domain found in the proteins belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 25 and 26; Probably localized in the outer membrane; Family membership. (534 aa)    
Predicted Functional Partners:
CAZ94437.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (31-104) and the Plug module (120-230) acting as a channel gate; The signal peptide is cleaved between the residues 27 and 28; Family membership.
 
     0.939
CAZ96586.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (22-95) and the Plug module (111-219) acting as a channel gate; Seems to possess a lipoprotein signal peptide is cleaved between the residues 16 and 17; Family membership.
  
     0.765
CAZ94439.1
Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols; Signal peptide of lipoprotein cleaved between the residues 15 and 16; Localized in the outer membrane; High confidence in function and specificity.
 
     0.747
CAZ97442.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations. Contains a carboxypeptidase regulatory domain (21-107) and the Plug module (120-210) acting as a channel gate. The signal peptide is cleaved between the residues 16 and 17; Family membership.
  
     0.704
CAZ97495.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the cytoplasmic membrane; Family membership.
  
 
   0.664
CAZ96699.1
Hypothetical protein; Contains a N-terminal transmembrane segment; Localized in the cytoplasmic membrane.
  
   0.639
CAZ97494.1
TonB-dependent receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (25-98) and the Plug module (114-221) acting as a channel gate; The signal peptide is cleaved between the residues 22 and 23; Family membership.
  
     0.616
CAZ96584.1
Conserved hypothetical membrane protein; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.552
CAZ96771.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (26-98) and the Plug module (115-224) acting as a channel gate; The signal peptide is cleaved between the residues 21 and 22; Family membership.
 
 
   0.538
CAZ97887.1
Conserved hypothetical protein; Contains an N-terminal haloacid dehalogenase (HAD) domain; Localized in the cytoplasm.
  
     0.527
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.