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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lamBEndo-1,3-beta-glucanase, family GH16; Endo-1,3-beta-glucanase (Laminarinase) hydrolyzes the 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans. Belongs to the family 16 of glycoside hydrolases (GH16). Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 22 and 23; Localized in the cytoplasmic membrane; High confidence in function and specificity. (296 aa)    
Predicted Functional Partners:
CAZ94439.1
Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols; Signal peptide of lipoprotein cleaved between the residues 15 and 16; Localized in the outer membrane; High confidence in function and specificity.
      0.952
CAZ95078.1
Glycoside hydrolase belonging to the family GH16. The substrate specificity is unclear. Contains a central carbohydrate binding module of the family 6 (CBM6) and a C-terminal domain of unknown function. Features a uncleaved signal peptide; Specificity unclear.
 
     0.880
CAZ96030.1
Conserved hypothetical protein; Localized in the cytoplasm.
    
 0.635
CAZ97740.1
Alpha-glucosidase, family GH97; Alpha-glucosidases catalyse the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. Involved in carbohydrate metabolism, notably in starch degradation; Belongs to the family 97 of glycoside hydrolases (GH97); Lipoprotein signal peptide cleaved between the residues 20 and 21; Probably localized in the outer membrane; High confidence in function and specificity.
  
     0.595
lamE
Endo-1,3-beta-glucanase, family GH64; Endo-1,3-beta-glucanase (Laminarinase) hydrolyzes the 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans. This laminarinase is a modular protein with a N-terminal catalytic module of the family 64 of glycoside hydrolases (GH64), a central carbohydrate binding module of the family 6 (CBM6) and a C-terminal conserved domain of unknown function. Features a signal peptide cleaved between the residues 20 and 21; Hypothetical protein.
   
 0.560
CAZ94389.1
Alpha-glucosidase, family GH97; Alpha-glucosidases catalyse the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. Involved in carbohydrate metabolism, notably in starch degradation; Belongs to the family 97 of glycoside hydrolases (GH97); Lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the cytoplasmic or outer membrane or both; High confidence in function and specificity.
  
     0.556
CAZ94436.1
Ligand-binding sensor protein; Protein that consists of an N-terminal periplasmic beta-propeller followed by a C-terminal cytoplasmic domain containing a LuxR-type HTH domain acting as transcrptionnal regulator. A transmembrane segment is present between these two domains. Signal peptide cleaved between the residues 28 and 29; Localized in the cytoplasmic membrane; Family membership.
 
     0.528
CAZ94387.1
Alpha-glucosidase, family GH97; Alpha-glucosidases catalyse the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. Involved in carbohydrate metabolism, notably in starch degradation; Belongs to the family 97 of glycoside hydrolases (GH97); Lipoprotein signal peptide cleaved between the residues 20 and 21; localized in the outer membrane; High confidence in function and specificity.
  
     0.470
CAZ94428.1
Alpha-glucosidase, family GH97; Alpha-glucosidases catalyse the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. Involved in carbohydrate metabolism, notably in starch degradation; Belongs to the family 97 of glycoside hydrolases (GH97); Lipoprotein signal peptide cleaved between the residues 28 and 29; Localized in the outer membrane; High confidence in function and specificity.
  
     0.464
bglX
Beta-glucosidase, family GH3; BglX catalyzes the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose. Belongs to the family 3 of the glycoside hydrolases (GH3); Contains a signal peptide cleaved between the residues 23 and 24; Localized in the periplasmic space; High confidence in function and specificity.
    0.460
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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