STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
susAAlpha-amylase, family GH13; SusA is a monomeric enzyme that endohydrolyses the 1,4-alpha-D-glucosidic linkages in starch, glycogen and related polysaccharides and oligosaccharides in a random manner. Reducing groups are liberated in the alpha-configuration; Belongs to the glycosyde hydrolase 13 family (GH13); Binds one calcium ion per subunit; Signal peptide of lipoprotein cleaved between the residues 17 and 18; Localized in the outer membrane; High confidence in function and specificity. (477 aa)    
Predicted Functional Partners:
susB
Alpha-glucosidase, family GH97; The Sus (starch utilization system) proteins are involved in the starch catabolism; The SusB protein is an alpha-glucosidase that hydrolyzes the alpha-1,4 linkages of maltose and maltotriose and the alpha-1,4 and alpha-1,6 linkages of the panose; It belongs to the family 97 of glycoside hydrolases; Signal peptide cleaved between the residue 24 and 25; Localized in the periplasmic space; High confidence in function and specificity.
 
  
  0.964
malS
Alpha-amylase, family GH13; Alpha-amylase catalyzes the endohydrolysis of 1,4-alpha-D-glucosidic linkages in oligosaccharides and polysaccharides. Belongs to the family 13 of the glycoside hydrolases. Involved in starch metabolism. Features an uncleaved signal peptide. Localized into the cytoplasmic membrane; High confidence in function and specificity.
 
 
 0.938
CAZ95681.1
Cyclomaltodextrinase, family GH13; Cyclomaltodextrinase hydrolyzes cyclodextrins. Can also act on linear maltodextrins, with the exception of maltose. Belongs to the family GH13 of the glycoside hydrolases. Involved in starch/glycogen metabolism; High confidence in function and specificity.
 
 
 0.936
malL
Oligo-1,6-glucosidase, family GH13; Oligo-1,6-glucosidase catalyzes the hydrolysis of 1, 6-alpha-D-glucosidic linkages in some oligosaccharides produced from starch and glycogen by alpha-amylase, and in isomaltose; Belongs to the family 13 of the glycoside hydrolases; Localized in the cytoplasm; High confidence in function and specificity.
  
 
 0.926
mapA
Maltose phosphorylase, family GH65; Maltose phosphorylase catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. It belongs to the family 65 of the glycoside hydrolases. Involved in the maltose metabolism; High confidence in function and specificity.
  
 
 0.915
malA
Alpha-glucosidase, family GH31; Alpha-glucosidase catalyzes the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. It belongs to the family 31 of the glycoside hydrolases. Involved in starch or glycogen metabolism; High confidence in function and specificity.
    
 0.910
cgaA
Glucan 1,4-alpha-glucosidase, also known as glucoamylase, catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose. Belongs to the family 15 of the glycoside hydrolases. Involved in starch/glycogen metabolism; High confidence in function and specificity.
  
 
 0.908
glgB
1,4-alpha-glucan branching enzyme, family GH13; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
    
  0.901
CAZ94389.1
Alpha-glucosidase, family GH97; Alpha-glucosidases catalyse the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. Involved in carbohydrate metabolism, notably in starch degradation; Belongs to the family 97 of glycoside hydrolases (GH97); Lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the cytoplasmic or outer membrane or both; High confidence in function and specificity.
    
  0.900
CAZ94428.1
Alpha-glucosidase, family GH97; Alpha-glucosidases catalyse the hydrolysis of terminal, non-reducing 1,4-linked alpha-D-glucose residues with release of alpha-D-glucose. Involved in carbohydrate metabolism, notably in starch degradation; Belongs to the family 97 of glycoside hydrolases (GH97); Lipoprotein signal peptide cleaved between the residues 28 and 29; Localized in the outer membrane; High confidence in function and specificity.
    
  0.900
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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