Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAZ95840.1 | lepB | ZOBELLIA_1787 | ZOBELLIA_3708 | Conserved hypothetical membrane protein; Contains a putative lipoprotein signal peptide cleaved between the residues 22 and 23; Possibly localized in the outer membrane; Conserved hypothetical protein. | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | 0.638 |
| CAZ95840.1 | rpoN | ZOBELLIA_1787 | ZOBELLIA_2338 | Conserved hypothetical membrane protein; Contains a putative lipoprotein signal peptide cleaved between the residues 22 and 23; Possibly localized in the outer membrane; Conserved hypothetical protein. | RNA polymerase sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. sigma-54 factors consist of three distinct regions: A conserved N-terminal glutamine-rich region (50 aa) that contains a potential leucine zipper motif. A region which is not conserved. A conserved C-terminal region (350 aa) that contains a second potential leucine zipper, a potential DNA-binding 'helix-turn-helix' motif and a perfectly conserved octapeptide whose function is not known; Localized in the cytoplasm; High confidenc [...] | 0.483 |
| CAZ96608.1 | CAZ97848.1 | ZOBELLIA_2458 | ZOBELLIA_3710 | This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership. | Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein. | 0.663 |
| CAZ96608.1 | lepB | ZOBELLIA_2458 | ZOBELLIA_3708 | This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership. | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | 0.701 |
| CAZ96608.1 | oxaA | ZOBELLIA_2458 | ZOBELLIA_554 | This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership. | Inner membrane protein oxaA; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.629 |
| CAZ96608.1 | rpoN | ZOBELLIA_2458 | ZOBELLIA_2338 | This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership. | RNA polymerase sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. sigma-54 factors consist of three distinct regions: A conserved N-terminal glutamine-rich region (50 aa) that contains a potential leucine zipper motif. A region which is not conserved. A conserved C-terminal region (350 aa) that contains a second potential leucine zipper, a potential DNA-binding 'helix-turn-helix' motif and a perfectly conserved octapeptide whose function is not known; Localized in the cytoplasm; High confidenc [...] | 0.437 |
| CAZ96608.1 | secD | ZOBELLIA_2458 | ZOBELLIA_2749 | This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership. | Protein-export membrane protein secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.506 |
| CAZ97811.1 | lepB | ZOBELLIA_3673 | ZOBELLIA_3708 | Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein. | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | 0.750 |
| CAZ97848.1 | CAZ96608.1 | ZOBELLIA_3710 | ZOBELLIA_2458 | Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein. | This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership. | 0.663 |
| CAZ97848.1 | lepB | ZOBELLIA_3710 | ZOBELLIA_3708 | Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein. | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | 0.692 |
| lepA | lepB | ZOBELLIA_1671 | ZOBELLIA_3708 | Elongation factor LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | 0.700 |
| lepB | CAZ95840.1 | ZOBELLIA_3708 | ZOBELLIA_1787 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | Conserved hypothetical membrane protein; Contains a putative lipoprotein signal peptide cleaved between the residues 22 and 23; Possibly localized in the outer membrane; Conserved hypothetical protein. | 0.638 |
| lepB | CAZ96608.1 | ZOBELLIA_3708 | ZOBELLIA_2458 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership. | 0.701 |
| lepB | CAZ97811.1 | ZOBELLIA_3708 | ZOBELLIA_3673 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein. | 0.750 |
| lepB | CAZ97848.1 | ZOBELLIA_3708 | ZOBELLIA_3710 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein. | 0.692 |
| lepB | lepA | ZOBELLIA_3708 | ZOBELLIA_1671 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | Elongation factor LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.700 |
| lepB | moeA2 | ZOBELLIA_3708 | ZOBELLIA_3707 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | 0.680 |
| lepB | oxaA | ZOBELLIA_3708 | ZOBELLIA_554 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | Inner membrane protein oxaA; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.671 |
| lepB | rnhB | ZOBELLIA_3708 | ZOBELLIA_931 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.657 |
| lepB | rpoN | ZOBELLIA_3708 | ZOBELLIA_2338 | Signal peptidase I, family S26; The type-1 signal peptidase (SPase I; also known as leader peptidase I) is a serine protease that removes the signal peptides from the majority of exported pre-proteins. SPase I is an integral membrane protein that is anchored in the cytoplasmic membrane by four N-terminal transmembrane segments with the main part of the protein protuding in the periplasmic space; Contains an additional C-terminal transmembrane segments; Belongs to family 26 (clan SF) of serine peptidases (S26), S26A subfamily; High confidence in function and specificity. | RNA polymerase sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. sigma-54 factors consist of three distinct regions: A conserved N-terminal glutamine-rich region (50 aa) that contains a potential leucine zipper motif. A region which is not conserved. A conserved C-terminal region (350 aa) that contains a second potential leucine zipper, a potential DNA-binding 'helix-turn-helix' motif and a perfectly conserved octapeptide whose function is not known; Localized in the cytoplasm; High confidenc [...] | 0.639 |
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