STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97848.1Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein. (213 aa)    
Predicted Functional Partners:
parB
Chromosome-partitioning protein parB; ParB is involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication. Localized in the cytoplasm; High confidence in function and specificity.
       0.820
parA
ParA is cnvolved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Localized in the cytoplasm; High confidence in function and specificity.
       0.820
CAZ96508.1
Contains 13 transmembrane segments; Integral cytoplasmic membrane protein; Conserved hypothetical protein.
  
     0.751
CAZ97832.1
TPR repeats protein; Conserved protein containing three C-terminal tetratrico peptide repeats (TPRs). TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Contains a transmembrane helix in the N-terminal region; Localized in the cytoplasmic membrane; Function unclear.
  
     0.731
CAZ94748.1
Conserved protein containing two PASTA domains (Pbp And Serine/Threonine kinase Associated domains). Such domains bind the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine. PASTA domain adopts a small globular fold consisting of 3 beta-sheets and an alpha-helix; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Family membership.
  
     0.722
hlpA
Homotrimeric molecular chaperone that interacts specifically with newly synthesised outer membrane proteins as they emerge in the periplasm from the Sec translocation machinery, thus maintaining the solubility of early folding intermediates during passage through the periplasm; Skp must interact directly with membrane lipids and lipopolysaccharide for an efficient Skp-assisted folding of membrane proteins; Belongs to the skp family; Signal peptide cleaved between the residues 23 and 24; Localized in the periplasmic space; High confidence in function and specificity.
  
     0.713
CAZ97091.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.713
dapB
Dihydrodipicolinate reductase reduces the alpha, beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso- diaminopimelate, which are critical for both protein and cell wall biosynthesis. DapB activity is repressed by lysine. It forms a homotetramer and binds one NAD(P) per subunit as cofactor. Localized in the cytoplasm; High confidence in function and specificity.
       0.701
CAZ94782.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.700
CAZ98902.1
Conserved hypothetical protein. Localized in the cytoplasm.
  
     0.695
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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