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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
susCTonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Possibly involved in the uptake of starch; Contains a carboxypeptidase regulatory domain (22-95) and the Plug module (111-227) acting as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership. (968 aa)    
Predicted Functional Partners:
susD
The Sus (starch utilization system) proteins are involved in the starch catabolism; The SusD protein seems involved in starch binding and belongs to the SusD/RagB family; The Genes of this family are very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the outer membrane; Family membership.
 
   
 0.964
susE
The Sus (starch utilization system) proteins probably are involved in the starch catabolism; Contains a putatif starch binding domain (CBM20); Signal peptide of lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; Function unclear.
 
 
 
 0.948
susB
Alpha-glucosidase, family GH97; The Sus (starch utilization system) proteins are involved in the starch catabolism; The SusB protein is an alpha-glucosidase that hydrolyzes the alpha-1,4 linkages of maltose and maltotriose and the alpha-1,4 and alpha-1,6 linkages of the panose; It belongs to the family 97 of glycoside hydrolases; Signal peptide cleaved between the residue 24 and 25; Localized in the periplasmic space; High confidence in function and specificity.
 
     0.757
susA
Alpha-amylase, family GH13; SusA is a monomeric enzyme that endohydrolyses the 1,4-alpha-D-glucosidic linkages in starch, glycogen and related polysaccharides and oligosaccharides in a random manner. Reducing groups are liberated in the alpha-configuration; Belongs to the glycosyde hydrolase 13 family (GH13); Binds one calcium ion per subunit; Signal peptide of lipoprotein cleaved between the residues 17 and 18; Localized in the outer membrane; High confidence in function and specificity.
 
     0.735
CAZ98833.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 25 and 26; Localized in the outer membrane; Family membership.
 
     0.711
CAZ94313.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 16 and 17; Localized in the cytoplasmic membrane; Family membership.
 
     0.666
CAZ98073.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 17 and 18; Localized in the outer membrane; Family membership.
  
     0.540
CAZ98032.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 17 and 18; Probably localized in the cytoplasmic membrane; Family membership.
  
     0.514
CAZ94425.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 18 and 19; Probably localized in the outer membrane; Family membership.
  
     0.499
CAZ94385.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Hypothetical protein.
  
     0.484
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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