STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ97933.1The major facilitator superfamily (MFS) transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients; Contains 11 transmembrane segments; Localized in the cytoplasmic membrane; Family membership. (422 aa)    
Predicted Functional Partners:
CAZ97934.1
Conserved hypothetical protein. Localized in the cytoplasm.
 
     0.905
CAZ97935.1
Conserved protein belonging to a family of putative cyclases. These proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site. Localized in the cytoplasm.
 
     0.865
CAZ97932.1
NAD(P)-dependent oxidoreductase belonging to the GFO/IDH/MOCA family. Adopts a Rossmann fold. Localized in the cytoplasm; Specificity unclear.
 
    0.860
ttuC
Tartrate dehydrogenase/decarboxylase has multiple catalytic activities. Apart from catalyzing the oxidation of (+)-tartrate to oxaloglycolate, also converts meso-tartrate to D-glycerate and catalyzes the oxidative decarboxylation of D-malate to pyruvate. It uses NAD+ as a cofactor. Belongs to the Isocitrate dehydrogenase family; Localized in the cytoplasm; High confidence in function and specificity.
 
  
 0.829
CAZ97938.1
Conserved hypothetical periplasmic protein; Could be a possible enzyme acting with carbohydrates; Contains a signal peptide cleaved between the residues 30 and 31; Localized in the periplasmic space; Conserved hypothetical protein.
 
     0.671
alyA3
Alginate lyase, family PL17; Alginate lyase catalyzes the eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. It belongs to the family 17 of the polysaccharide lyases. Features an uncleaved signal peptide. Features a signal peptide cleaved between residues 25 and 26. Localized in the periplasm; High confidence in function and specificity.
 
    0.612
alyA4
Alginate lyase, family PL6; Alginate lyase catalyzes the eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. It belongs to the family 6 of the polysaccharide lyases. Features an uncleaved signal peptide; High confidence in function and specificity.
 
    0.610
alyA6
Alginate lyase, family PL6; Alginate lyase catalyzes the eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. It belongs to the family 6 of the polysaccharide lyases. Features a signal peptide cleaved between residues 22 and 23. Localized in the periplasm; High confidence in function and specificity.
 
    0.544
CAZ97937.1
The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Family membership.
     
 0.532
CAZ96767.1
Transcriptional regulator involved in the repression and/or the positive regulation of genes encoding for enzymes; Contains an N-terminal HTH domain of GntR-like bacterial transcriptional regulators, involved in the binding of the protein to the operator sequences in the DNA and a C-terminal FCD domain that probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N- terminal DNA-binding domain (HTH domain); Localized in the cytoplasm; Family membership.
 
   
 0.471
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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