STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98025.1Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Conserved hypothetical protein. (163 aa)    
Predicted Functional Partners:
CAZ98026.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 23 and 24; Localized in the periplasmic space; Conserved hypothetical protein.
 
     0.861
CAZ97170.1
Oxidoreductase that contains in its C-terminal, a flavodoxin-like domain with a flavin mononucleotide (FMN)-binding site and a NAD-binding domain. In its N-terminal part there are four transmembrane segemnts; Belongs to the Flavoprotein pyridine nucleotide cytochrome reductase family; Localized in the cytoplasmic membrane; Specificity unclear.
 
     0.797
CAZ97172.1
The ankyrin repeat is involved in protein-protein interaction. The repeats stack together to form an L-shaped structure; Contains eleven ankyrin repeats; Signal peptide cleaved between the residues 24 and 25; Localized in the periplasmic space; Function unclear.
 
     0.797
CAZ98028.1
Conserved hypothetical lipoprotein; Signal peptide of prokaryotic lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; Conserved hypothetical protein.
 
     0.572
CAZ98027.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a Plug module (45-153) acting as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership.
 
     0.496
cgaA
Glucan 1,4-alpha-glucosidase, also known as glucoamylase, catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose. Belongs to the family 15 of the glycoside hydrolases. Involved in starch/glycogen metabolism; High confidence in function and specificity.
       0.413
CAZ98625.1
Conserved hypothetical protein. Localized in the cytoplasm.
  
     0.403
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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