STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98027.1TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a Plug module (45-153) acting as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership. (708 aa)    
Predicted Functional Partners:
CAZ98028.1
Conserved hypothetical lipoprotein; Signal peptide of prokaryotic lipoprotein cleaved between the residues 19 and 20; Localized in the outer membrane; Conserved hypothetical protein.
 
     0.949
CAZ98026.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 23 and 24; Localized in the periplasmic space; Conserved hypothetical protein.
 
     0.831
CAZ98424.1
Protein that corresponds to a conserved domain in several bacterial protein; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.591
CAZ98409.1
The outer membrane efflux proteins (OEP) are composed of two repeats of OEP domain to form a trimeric channel continuous, solvent-accessible conduit that spans both the outer membrane and periplasmic space; May be specialized for the signal peptide independent extracellular secretion of a variety of substrates in Gram-negative bacteria; Signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Belongs to the type I secretion system; Family membership.
  
     0.567
CAZ96702.1
Conserved membrane lipoprotein; Lipoprotein with a signal peptide cleaved between the residues 25 and 26; Localized in the outer memebrane; Conserved hypothetical protein.
  
     0.538
CAZ98025.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; Conserved hypothetical protein.
 
     0.496
CAZ98029.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.466
CAZ96693.1
Conserved membrane lipoprotein; Outer membrane transport protein from the OmpP1/FadL/TodX family; Signal peptide of lipoprotein cleaved between the residues 21 and 22; Localized in the outer membrane; Conserved hypothetical protein.
  
   
 0.450
CAZ96695.1
Conserved membrane lipoprotein; Lipoprotein that cosists of five repeats of the Kelch domain found in several eukariotic proteins; Signal peptide cleaved between the residues 23 and 24; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.434
CAZ96701.1
Protein that contains five repeats of twenty aminoacids The MORN (membrane occupation and recognition nexus) repeats would contribute to the cytoplasmic membrane binding, possibly by interacting with phospholipids; Putative lipoprotein signal peptide cleaved between the residues 18 and 19; possibly localized in the outer membrane; Conserved hypothetical protein.
  
     0.422
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.