STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98148.1Proline racemase catalyzes the interconversion of L-and D-proline. It forms a homodimer. Localized in the cytoplasm; High confidence in function and specificity. (335 aa)    
Predicted Functional Partners:
dadA
D-amino acid dehydrogenase is involved in D-amino acids degradation. It converts a D-amino acid to a 2-oxo acid and ammoniac; Binds a FAD as cofactor; Localized in the cytoplasm; High confidence in function and specificity.
 
  
 0.948
proC2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.914
proC1
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.914
aldH
NADP-dependent fatty aldehyde dehydrogenase; Catalyzes the oxidation of long-chain aliphatic aldehydes to acids., Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor; located in the cytoplasm; High confidence in function and specificity.
 
 
 
 0.909
dapA1
Dihydrodipicolinate synthetase; Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L- aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue; localized in the cytoplasm; High confidence in function and specificity; Belongs to the DapA family.
 
  
 0.871
arcB
The Ornithine cyclodeaminase catalyses the deamination of ornithine to proline; The reaction uses the NAD as cofactor and is stimulated by the presence of ADP or ATP and is inhibited by O(2); Belongs to the mu- crystallin protein family; Localized in the cytoplasm; High confidence in function and specificity.
 
   
 0.650
crtK
Protein possibly involved in the carotenoid biosynthesis; Contains five transmembrane segments; Belongs to the TspO/BZRP family; Localized in the cytoplasmic membrane; Function unclear.
   
    0.598
cydA
Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration. It catalyzes the reaction: Ubiquinol-8 + O2 = Ubiquinone-8 + H2O. It is a heterodimer of subunits I and II. Binds 3 heme groups per dimer. Contains the protoheme IX center b595 and one iron-chlorin (heme D). Features nine transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
       0.491
cydB
Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration. It catalyzes the reaction: Ubiquinol-8 + O2 = Ubiquinone-8 + H2O. It is a heterodimer of subunits I and II. Binds 3 heme groups per dimer. Contains the protoheme IX center b595 and one iron-chlorin (heme D). Features nine transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
       0.491
CAZ98145.1
The AraC-type transcriptional regulators are usually involved in the positive regulation of catabolic, metabolic and transport operons. Contains a N-terminal domain presumed to interact with effector molecules and may be involved in dimerization and two C-terminal AraC- type HTH DNA-binding domains involved in the binding of the protein to the operator sequences in the DNA. Localized in the cytoplasm; Family membership.
 
     0.487
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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