STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydBCytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration. It catalyzes the reaction: Ubiquinol-8 + O2 = Ubiquinone-8 + H2O. It is a heterodimer of subunits I and II. Binds 3 heme groups per dimer. Contains the protoheme IX center b595 and one iron-chlorin (heme D). Features nine transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity. (345 aa)    
Predicted Functional Partners:
cydA
Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration. It catalyzes the reaction: Ubiquinol-8 + O2 = Ubiquinone-8 + H2O. It is a heterodimer of subunits I and II. Binds 3 heme groups per dimer. Contains the protoheme IX center b595 and one iron-chlorin (heme D). Features nine transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
 0.999
sdhA
Succinate dehydrogenase is a complex containing three subunits: a flavoprotein, an iron-sulfur protein and cytochrome b-558. It is involved in the citrate cycle and catalyzes the reaction: succinate + acceptor = fumarate + reduced acceptor. It uses a FAD as a cofactor. SdhA is the flavoprotein subunit. Localized in the cytoplasm; High confidence in function and specificity.
     
 0.624
sdhB
Succinate dehydrogenase is a complex containing three subunits: a flavoprotein, an iron-sulfur protein and cytochrome b-558. It is involved in the citrate cycle and catalyzes the reaction: succinate + acceptor = fumarate + reduced acceptor. It uses a FAD as a cofactor. SdhB is the iron-sulfur subunit. Localized in the cytoplasm; High confidence in function and specificity.
     
 0.581
dadA
D-amino acid dehydrogenase is involved in D-amino acids degradation. It converts a D-amino acid to a 2-oxo acid and ammoniac; Binds a FAD as cofactor; Localized in the cytoplasm; High confidence in function and specificity.
       0.510
sdhC
Succinate dehydrogenase is a complex containing three subunits: a flavoprotein, an iron-sulfur protein and cytochrome b-558. It is involved in the citrate cycle and catalyzes the reaction: succinate + acceptor = fumarate + reduced acceptor. It uses a FAD as a cofactor. SdhC is the cytochrome b558 subunit. It binds two hemes. Features five transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
     
  0.499
CAZ98148.1
Proline racemase catalyzes the interconversion of L-and D-proline. It forms a homodimer. Localized in the cytoplasm; High confidence in function and specificity.
       0.491
aldH
NADP-dependent fatty aldehyde dehydrogenase; Catalyzes the oxidation of long-chain aliphatic aldehydes to acids., Aldehyde dehydrogenases are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor; located in the cytoplasm; High confidence in function and specificity.
  
  
 0.462
CAZ95679.1
Rubredoxin family protein; Conserved protein containing a C-terminal Rubredoxin-like domain. The most conserved feature of the rubredoxin-like domain is the cluster of four cysteines involved in iron binding (Cys-x-x-Cys-x(n)-Cys-x-x-Cys). This domain folds into a short three-stranded antiparallel beta-sheet and a number of loops; Localized in the cytoplasm; Family membership.
  
  
 0.431
hmoA
Molybdopterin oxidoreductase, iron-sulfur binding subunit; Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; Contains 4 4Fe-4S type ferredoxin domains and a putatif Twin-arginine translocation pathway signal; Localized in the cytoplasmic membrane; Family membership.
  
 
 0.409
ccoNO
Fusion of the subunits CcoN and CcoO of the Cytochrome cbb3 oxidase. Converts the ferrocytochrome to ferricytochrome. Belongs to the ccoNOQP operon. Contains 13 transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
     
 0.401
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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