STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98215.1Conserved hypothetical membrane protein; Contains three transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein. (104 aa)    
Predicted Functional Partners:
pyrC
Dihydroorotase is involved in Pyrimidine biosynthesis. It catalyzes the reaction: (S)-dihydroorotate + H2O = N-carbamoyl-L-aspartate. It forms a homodimer and binds 2 zinc ions per subunit. Localized in the cytoplasm; High confidence in function and specificity.
       0.703
CAZ98217.1
Membrane protein displaying a domain of unknown function DUF1550; Contains two N-terminal transmembrane helices; Localized in the cytoplasmic membrane; Family membership.
       0.697
CAZ98214.1
Conserved hypothetical membrane protein; Contains three transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
    
0.609
estB
This carboxylesterase hydrolyzes carboxylic ester bonds with relatively broad substrate specificity. It forms a homodimer. Each subunit consists of a central seven-stranded beta sheet flanked by six alpha helices (alpha/beta hydrolase fold). The structure reveals the catalytic triad Ser-His-Asp. Localized in the cytoplasm; High confidence in function and specificity.
       0.552
CAZ98218.1
Glycosyltransferase, family GT2; Glycosyltransferase catalyzes the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. This enzyme belongs to the family 2 of the glycosyltransferases; Specificity unclear.
       0.506
CAZ95967.1
Conserved hypothetical membrane protein; Contains a putative putative lipoprotein signal peptide cleaved between the residues 29 and 30; Possibly localized in the cytoplasm or outer membrane; Conserved hypothetical protein.
   
    0.499
CAZ96363.1
Conserved hypothetical protein; Signal peptide putatively cleaved between the residues 19 and 20; Localized in tyhe periplasmic space.
   
    0.499
CAZ97372.1
Conserved hypothetical lipoprotein; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 21 and 22; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.499
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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