STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98220.1Conserved hypothetical lipoprotein; Protein putatively involved in the coordinating multi-protein complex assemblies; Contains five WD40 repeats involved in the formation of circularised beta-propeller structure; Prokaryotic lipoprotein signal peptide cleaved between the residues 16 and 17; Localized in the outer membrane; Conserved hypothetical protein. (393 aa)    
Predicted Functional Partners:
CAZ98221.1
The Crp/Fnr-type transcriptional regulators complexe with cyclic AMP and bind to operator sites near the promoter with a C-terminal HTH domain to regulate the transcription of several catabolite-sensitive operons; They predominantly act as transcription activators, but can also be important repressors, and respond to diverse intracellular and exogenous signals; Binds 1 4Fe-4S cluster per subunit; Localized in the cytoplasm; Family membership.
 
     0.689
CAZ98770.1
Protein belonging to the OmpA family. OmpA-like domains are thought to be responsible for non-covalent interactions with peptidoglycan; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 16 and 17; Localized in the outer membrane; Family membership.
 
 
 0.572
CAZ98219.1
Putative protein.
       0.554
CAZ96884.1
TPR repeat-containing protein; Protein that contains at least ten Tetratricopeptide repeat (TPR) domains involved in the proteinprotein interactions and the assembly of multiprotein complexes; Signal peptide cleavbed between the residues 21 and 22; Localized in the periplasmic space; Function unclear.
  
  
 0.479
tonB2
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.471
tonB1
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.469
glcG
The protein GlcG is a conserved protein iniatilly found in the glycolate utilization operon. Its exact function is unknown. Signal peptide cleaved between the residues 25 and 26. Localized in the periplasmic space; Function unclear.
       0.468
CAZ96289.1
TPR repeats protein; Protein containing six tetratrico peptide repeats (TPR). TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Signal peptide cleaved between the residues 18 and 19; Localized in the periplasmic space; Function unclear.
  
  
 0.450
CAZ98223.1
Hypothetical periplasmic protein; Contains a C-terminal stress responsive alpha-beta barrel domain; Signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Hypothetical protein.
       0.448
CAZ95780.1
OmpA-like outer membrane protein; This protein has a modular architecture with a N-terminal domain of unknown function, a central beta-propeller domain, encompassing three WD40 repeats, and a C-terminal OmpA domain. OmpA-like domains are thought to be responsible for non-covalent interactions with peptidoglycan. Contains a signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Function unclear.
 
 
 0.447
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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