STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98305.1Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein. (142 aa)    
Predicted Functional Partners:
ygaU
Protein YgaU, family CBM50; Protein YgaU contains a C-terminal peptidoglycan-binding LysM domain. LysM domains belongs to the family 50 of the carbohydrate binding modules (CBM50). Localized in the cytoplasm; Family membership.
   
  
 0.851
CAZ98306.1
Amidase catalyzes the reaction: a monocarboxylic acid amide + H2O = a monocarboxylate + NH3. The specificity of this enzyme is unknown. Belongs to a protein family including N-acetylmuramoyl-L-alanine amidase. Features an uncleaved signal peptide. Localized in the cytoplasmic membrane; Specificity unclear.
 
     0.805
CAZ98307.1
Peptidase family M14 contains mainly metallocarboxypeptidases. The single catalytic zinc ion is tetrahedrally coordinated by two histidines and a glutamate, as well as a water molecule. One of the histidines and the glutamate occur in the motif His-Xaa-Xaa-Glu. Features a signal peptide cleaved between the residues 18 and 19. Localized in the periplasm; Specificity unclear.
       0.773
gyaR
Glyoxylate reductase converts, in presence of NAD+, the Glycolate into glyoxylate. GyaR is involved in the glyoxylate metabolism (conversion of lipids into glucids); Contains a glycine-rich region located in the central section corresponding to the NAD-binding domain; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family; Localized in the cytoplasm; High confidence in function and specificity.
       0.661
CAZ95211.1
Hypothetical lipoprotein; Putatively contains a unique copy of LVIVD domain. This domain can be involved a beta propeller fold; Signal peptide of lipoprotein cleaved between the residues 18 and 19; Localized in the outer membrane; Hypothetical protein.
  
     0.553
CAZ95757.1
Conserved hypothetical protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space.
  
     0.523
CAZ98303.1
Protein belonging to the family 12 of Serine peptidases (S12). Could be a beta-lactamase classified as S12 non-peptidase homologues. However, the active site residues Ser and Lys that form the catalytic dyad are found in the motif Ser-Xaa-Thr-Lys; Contains a N-terminal transmembrane segment and a C-terminal beta-lactamase domain; Localized in the cytoplasmic membrane; Function unclear.
       0.473
CAZ98218.1
Glycosyltransferase, family GT2; Glycosyltransferase catalyzes the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. This enzyme belongs to the family 2 of the glycosyltransferases; Specificity unclear.
  
     0.459
CAZ95598.1
The N-Acetyltransferases catalyze the transfer of an acetyl group from acetyl-CoA to a substrate molecule; Belongs to Gcn5 or GNAT actyltransferase family; Localized in the cytoplasm; Family membership.
  
     0.434
CAZ98470.1
AraC-type transcriptional regulator; Modular protein containing two N-terminal AraC-type HTH DNA-binding domains involved in the binding of the protein to the operator sequences in the DNA followed by two C-terminal Tetratricopeptide repeats. AraC-type transcriptional regulators are usually involved in the positive regulation of catabolic, metabolic and transport operons. TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes. A single TPR contains two antiparallel alpha helices which pack into an open structure such that tandem arrays of TPR motifs [...]
  
     0.424
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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