STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94499.1Putative protein. (34 aa)    
Predicted Functional Partners:
CAZ94500.1
Putative protein.
       0.737
CAZ94501.1
Putative protein.
       0.552
CAZ94502.1
Conserved hypothetical protein; Contains two transmembrane segments; Probably localized in the cytoplasmic membrane.
       0.552
CAZ94498.1
Transposase (pseudogene), family 8; Sequence representing the N-terminal part of transposase that could be an insertion sequence (IS). The transposases are encoded by mobile genetic elements such as transposon or insertion sequences (IS). Transposases catalyze the transposition, by site-specific DNA recombination, of these autonomous mobile genetic elements. The catalytic activity of this enzyme family involves DNA cleavage followed by a strand transfer reaction; Contains a helix-turn-helix domain; Belongs to the family 8 of transposases; Localized in the cytoplasm; High confidence in [...]
       0.488
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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