STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsCRibose ABC importer, permease component; Part of the binding-protein-dependent ABC transporter system for D-ribose. Probably responsible for the translocation of the substrate across the membrane; Contains seven transmembrane segments; Belongs to the binding-protein-dependent transport system permease family; Localized in the cytoplasmic membrane; High confidence in function and specificity. (322 aa)    
Predicted Functional Partners:
rbsB
Ribose ABC importer, periplasmic component; RbsB is the D-ribose-binding protein involved in the high-affinity D-ribose membrane transport system; Belongs to the bacterial solute-binding protein 2 family; Seems to have a uncleavable signal sequence; Localized in the cytoplasmic membrane and exposed in the periplasmic space; High confidence in function and specificity.
 0.999
rbsA
Ribose ABC importer, ATPase component; Part of the ABC transporter complex RbsABCD involved in D-ribose import. RbsA is Responsible for energy coupling to the transport system; The complex is composed of two ATP-binding proteins, two transmembrane proteins (rbsC and rbsD) and a solute-binding protein (rbsB); Contains 2 ABC transporter domains; Belongs to the ABC transporter family, ribose importer subfamily; Localized in the cytoplasmic membrane as a peripheral membrane protein; High confidence in function and specificity.
 0.999
scrK2
Fructokinase catalyzes the transfer of a phosphate group from ATP to convert the fructose to fructose-6-phosphate, which is an entry point into glycolysis (Embden-Meyerhof pathway) via conversion into glucose-6-phosphate; Belongs to the carbohydrate kinase PfkB superfamily, bacterial fructokinase family; Localized in the cytoplasm; Family membership.
 
  
 0.839
uxuB
D-mannonate oxidoreductase or Fructuronate reductase catalyzes the NAD-dependent reduction of fructuronate into mannonate; Belongs to the Long-chain mannitol dehydrogenase family; Localized in the cytoplasm; High confidence in function and specificity.
 
   
 0.827
scrK1
Fructokinase catalyzes the transfert of phosphate group from ATP to convert the fructose to fructose-6-phosphate, which is an entry point into glycolysis (Embden-Meyerhof pathway) via conversion into glucose-6-phosphate; Belongs to the carbohydrate kinase pfkB superfamily, bacterial fructokinase family; Localized in the cytoplasm; High confidence in function and specificity.
 
  
 0.472
CAZ97481.1
The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Family membership.
 
  
 0.472
CAZ96380.1
The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Specificity unclear.
 
  
 0.470
CAZ98394.1
Conserved hypothetical protein; Probably localized in the cytoplasm.
       0.468
CAZ97937.1
The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Family membership.
 
  
 0.463
CAZ98035.1
The LacI-type transcriptional regulators are involved in the repression and/or the positive regulation of genes encoding for catabolic enzymes and are important in the coordination of operons; They contain a N-terminal lacI-type HTH domain involved in the binding of the protein to the operator sequences in the DNA and a C- terminal periplasmic binding protein domain that are the primary receptors for chemotaxis and transport of many sugar based solutes that act as inducers; Localized in the cytoplasm; Family membership.
 
  
 0.461
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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