STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98405.1The transcriptional regulators with the marR-type HTH domain control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents. Many of the marR-like regulators respond to aromatic compounds; Contains a DNA-binding, winged helix-turn-helix (wHTH) domain; Localized in the cytoplasm; Family membership. (120 aa)    
Predicted Functional Partners:
arcB
The Ornithine cyclodeaminase catalyses the deamination of ornithine to proline; The reaction uses the NAD as cofactor and is stimulated by the presence of ADP or ATP and is inhibited by O(2); Belongs to the mu- crystallin protein family; Localized in the cytoplasm; High confidence in function and specificity.
       0.782
CAZ98404.1
This enzyme belongs to the acid phosphatase/vanadium-dependent haloperoxidase family; Seems to have an uncleavable signal peptide; Possibly localized in the cytoplasmic membrane; Family membership.
       0.473
CAZ98407.1
Conserved hypothetical protein; Lipoprotein belonging to the spore coat protein H family; Signal peptide cleaved between the residues 19 and 20; Localized in the outer membrane.
       0.441
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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