Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAZ98419.1 | CAZ98420.1 | ZOBELLIA_4284 | ZOBELLIA_4285 | Hypothetical Co-chaperone that could be part of a chaperone (protein folding) system; Contains a N-terminal 'J' domain; Belongs to the J-protein family, type 3 subgroup; Localized in the cytoplasm; Function unclear. | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | 0.707 |
| CAZ98419.1 | dbpA | ZOBELLIA_4284 | ZOBELLIA_4286 | Hypothetical Co-chaperone that could be part of a chaperone (protein folding) system; Contains a N-terminal 'J' domain; Belongs to the J-protein family, type 3 subgroup; Localized in the cytoplasm; Function unclear. | RNA helicase DbpA Has a helix-destabilizing activity, not coupled to the ATPase activity. Can unwind the 23S rRNA as well as 16S rRNA. Exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA. Could play a major role in the assembly process of the active center of 50S ribosomal subunits; Contains a C-terminal DbpA RNA binding domain specific for hairpin 92 of 23S rRNA; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; High confidence in function and specificity. | 0.865 |
| CAZ98419.1 | fusA | ZOBELLIA_4284 | ZOBELLIA_2508 | Hypothetical Co-chaperone that could be part of a chaperone (protein folding) system; Contains a N-terminal 'J' domain; Belongs to the J-protein family, type 3 subgroup; Localized in the cytoplasm; Function unclear. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.649 |
| CAZ98419.1 | ppiA | ZOBELLIA_4284 | ZOBELLIA_3702 | Hypothetical Co-chaperone that could be part of a chaperone (protein folding) system; Contains a N-terminal 'J' domain; Belongs to the J-protein family, type 3 subgroup; Localized in the cytoplasm; Function unclear. | Peptidyl-prolyl cis-trans isomerase, or PPIase or rotamase, accelerates the folding of proteins. It catalyzes the peptidyl-prolyl isomerisation during which the peptide bond preceding proline is stabilised in the cis conformation in oligopeptides; Contains a N-terminal Cyclophilin type PPIase/CLD domain and a C-terminal FKBP-type peptidyl-prolyl cis-trans isomerase domain; Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; High confidence in function and specificity. | 0.528 |
| CAZ98419.1 | ppiB | ZOBELLIA_4284 | ZOBELLIA_2833 | Hypothetical Co-chaperone that could be part of a chaperone (protein folding) system; Contains a N-terminal 'J' domain; Belongs to the J-protein family, type 3 subgroup; Localized in the cytoplasm; Function unclear. | Peptidyl-prolyl cis-trans isomerase, or PPIase or rotamase, accelerates the folding of proteins. It catalyzes the peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation in oligopeptides; Contains a N-terminal Cyclophilin type PPIase/CLD and a C-terminal FKBP-type peptidyl-prolyl cis- trans isomerase; Localized in the cytoplasm; High confidence in function and specificity. | 0.528 |
| CAZ98420.1 | CAZ98419.1 | ZOBELLIA_4285 | ZOBELLIA_4284 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | Hypothetical Co-chaperone that could be part of a chaperone (protein folding) system; Contains a N-terminal 'J' domain; Belongs to the J-protein family, type 3 subgroup; Localized in the cytoplasm; Function unclear. | 0.707 |
| CAZ98420.1 | csdA | ZOBELLIA_4285 | ZOBELLIA_40 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | The ATP-dependent RNA helicase CsdA, originally named DeaD because of its homology with other DEAD box proteins, has a helix-destabilizing activity. It is known to be a cold shock protein; After induction by cold shock, CsdA is ribosome associated; Plays a key role in optimal cell growth at low temperature; Suppressor of a mutant defective in rpsB gene for ribosomal protein S2; interacts with the Poly(A) polymerase; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; High confidence in function and specificity. | 0.912 |
| CAZ98420.1 | dbpA | ZOBELLIA_4285 | ZOBELLIA_4286 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | RNA helicase DbpA Has a helix-destabilizing activity, not coupled to the ATPase activity. Can unwind the 23S rRNA as well as 16S rRNA. Exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA. Could play a major role in the assembly process of the active center of 50S ribosomal subunits; Contains a C-terminal DbpA RNA binding domain specific for hairpin 92 of 23S rRNA; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; High confidence in function and specificity. | 0.828 |
| CAZ98420.1 | fusA | ZOBELLIA_4285 | ZOBELLIA_2508 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.678 |
| CAZ98420.1 | pnpA | ZOBELLIA_4285 | ZOBELLIA_768 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.676 |
| CAZ98420.1 | ppiA | ZOBELLIA_4285 | ZOBELLIA_3702 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | Peptidyl-prolyl cis-trans isomerase, or PPIase or rotamase, accelerates the folding of proteins. It catalyzes the peptidyl-prolyl isomerisation during which the peptide bond preceding proline is stabilised in the cis conformation in oligopeptides; Contains a N-terminal Cyclophilin type PPIase/CLD domain and a C-terminal FKBP-type peptidyl-prolyl cis-trans isomerase domain; Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; High confidence in function and specificity. | 0.787 |
| CAZ98420.1 | ppiB | ZOBELLIA_4285 | ZOBELLIA_2833 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | Peptidyl-prolyl cis-trans isomerase, or PPIase or rotamase, accelerates the folding of proteins. It catalyzes the peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation in oligopeptides; Contains a N-terminal Cyclophilin type PPIase/CLD and a C-terminal FKBP-type peptidyl-prolyl cis- trans isomerase; Localized in the cytoplasm; High confidence in function and specificity. | 0.786 |
| CAZ98420.1 | rpsA | ZOBELLIA_4285 | ZOBELLIA_506 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.663 |
| CAZ98420.1 | rpsD | ZOBELLIA_4285 | ZOBELLIA_2534 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.699 |
| CAZ98420.1 | rpsE | ZOBELLIA_4285 | ZOBELLIA_2527 | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.662 |
| csdA | CAZ98420.1 | ZOBELLIA_40 | ZOBELLIA_4285 | The ATP-dependent RNA helicase CsdA, originally named DeaD because of its homology with other DEAD box proteins, has a helix-destabilizing activity. It is known to be a cold shock protein; After induction by cold shock, CsdA is ribosome associated; Plays a key role in optimal cell growth at low temperature; Suppressor of a mutant defective in rpsB gene for ribosomal protein S2; interacts with the Poly(A) polymerase; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; High confidence in function and specificity. | DEAD/DEAH RNA helicase; Protein that could be involved in ATP-dependent RNA unwinding in a variety of cellular processes, including ribosome assembly, protein synthesis, and RNA degradation; Contains a DEAD box; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; Family membership. | 0.912 |
| csdA | fusA | ZOBELLIA_40 | ZOBELLIA_2508 | The ATP-dependent RNA helicase CsdA, originally named DeaD because of its homology with other DEAD box proteins, has a helix-destabilizing activity. It is known to be a cold shock protein; After induction by cold shock, CsdA is ribosome associated; Plays a key role in optimal cell growth at low temperature; Suppressor of a mutant defective in rpsB gene for ribosomal protein S2; interacts with the Poly(A) polymerase; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; High confidence in function and specificity. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.678 |
| csdA | pnpA | ZOBELLIA_40 | ZOBELLIA_768 | The ATP-dependent RNA helicase CsdA, originally named DeaD because of its homology with other DEAD box proteins, has a helix-destabilizing activity. It is known to be a cold shock protein; After induction by cold shock, CsdA is ribosome associated; Plays a key role in optimal cell growth at low temperature; Suppressor of a mutant defective in rpsB gene for ribosomal protein S2; interacts with the Poly(A) polymerase; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; High confidence in function and specificity. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.676 |
| csdA | ppiA | ZOBELLIA_40 | ZOBELLIA_3702 | The ATP-dependent RNA helicase CsdA, originally named DeaD because of its homology with other DEAD box proteins, has a helix-destabilizing activity. It is known to be a cold shock protein; After induction by cold shock, CsdA is ribosome associated; Plays a key role in optimal cell growth at low temperature; Suppressor of a mutant defective in rpsB gene for ribosomal protein S2; interacts with the Poly(A) polymerase; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; High confidence in function and specificity. | Peptidyl-prolyl cis-trans isomerase, or PPIase or rotamase, accelerates the folding of proteins. It catalyzes the peptidyl-prolyl isomerisation during which the peptide bond preceding proline is stabilised in the cis conformation in oligopeptides; Contains a N-terminal Cyclophilin type PPIase/CLD domain and a C-terminal FKBP-type peptidyl-prolyl cis-trans isomerase domain; Signal peptide cleaved between the residues 22 and 23; Localized in the periplasmic space; High confidence in function and specificity. | 0.797 |
| csdA | ppiB | ZOBELLIA_40 | ZOBELLIA_2833 | The ATP-dependent RNA helicase CsdA, originally named DeaD because of its homology with other DEAD box proteins, has a helix-destabilizing activity. It is known to be a cold shock protein; After induction by cold shock, CsdA is ribosome associated; Plays a key role in optimal cell growth at low temperature; Suppressor of a mutant defective in rpsB gene for ribosomal protein S2; interacts with the Poly(A) polymerase; Belongs to the helicases superfamily II, DEAD/DEAH box RNA helicase family, DEAD box subfamily; Localized in the cytoplasm; High confidence in function and specificity. | Peptidyl-prolyl cis-trans isomerase, or PPIase or rotamase, accelerates the folding of proteins. It catalyzes the peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation in oligopeptides; Contains a N-terminal Cyclophilin type PPIase/CLD and a C-terminal FKBP-type peptidyl-prolyl cis- trans isomerase; Localized in the cytoplasm; High confidence in function and specificity. | 0.791 |
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