STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98465.1TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (21-101) and the Plug module (136-233) acting as a channel gate; The signal peptide is cleaved between the residues 19 and 20; Family membership. (835 aa)    
Predicted Functional Partners:
CAZ98463.1
ABC-2 type exporter, permease component; Putatif ABC-2 type (ATP-binding cassette) transporter, membrane domain; ABC-2 type transporters are responsible for extrusion of a variety of compounds across biological membranes; Contains six transmembrane segments; The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport; Localized in the cytoplasmic membrane; Family membership.
 
   
 0.950
CAZ98464.1
ABC-2 type exporter, permease component; Putatif ABC-2 type (ATP-binding cassette) transporter, membrane domain; ABC-2 type transporters are responsible for extrusion of a variety of compounds across biological membranes; Contains six transmembrane segments; The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport; Localized in the cytoplasmic membrane; Family membership.
 
   
 0.948
CAZ98466.1
ABC transporter, ATPase component; This protein is the nucleotide-binding domain of the ABC transporters (ABC ATPase); Responsible for coupling the energy of ATP hydrolysis to conformational changes in the permease component (ABC membrane); Localized in the cytoplasm near of the cytoplasmic membrane by association with the permease component; Family membership.
 
   
 0.922
CAZ95053.1
TonB-dependent Transducer; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins; The presence of an additional N-terminal extension (Secretin/TonB (STN) domain) that probably interacts with an anti-sigma factor, would be responsible of the signal transduction; Contains a carboxypeptidase regulatory domain (123-197) and a Plug module (214-344) acting as the channel gate; The signal peptide is cleaved between the residue 17 and 18; Family membership.
  
  
 0.554
CAZ95054.1
Probable SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 18 and 19; Probably localized in the outer membrane; Family membership.
  
   
 0.526
CAZ98255.1
Anti-sigma factor; This protein would be an intermediate between a TonB-dependant transducer and a ECF sigma factor in the transmission of a signal from outside towards the cytoplasm; Contains a C-terminal domain that displays similarities with the anti-sigma factors of the FecR/PupR family; The N-terminal domain, without similarities, would interact with the N-terminal extension found in the TonB-dependant transducers; Protein localized in the cytoplasmic membrane; Family membership.
 
 
 0.502
CAZ98082.1
Anti-sigma factor; This protein would be an intermediate between a TonB-dependant transducer and a ECF sigma factor in the transmission of a signal from outside towards the cytoplasm; Contains a C-terminal domain that displays similarities with the anti-sigma factors of the FecR/PupR family; The N-terminal domain, without similarities, would interact with the N-terminal extension found in the TonB-dependant transducers; Protein localized in the cytoplasmic membrane; Family membership.
 
 
 0.501
lamE
Endo-1,3-beta-glucanase, family GH64; Endo-1,3-beta-glucanase (Laminarinase) hydrolyzes the 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans. This laminarinase is a modular protein with a N-terminal catalytic module of the family 64 of glycoside hydrolases (GH64), a central carbohydrate binding module of the family 6 (CBM6) and a C-terminal conserved domain of unknown function. Features a signal peptide cleaved between the residues 20 and 21; Hypothetical protein.
  
     0.500
CAZ98232.1
Conserved hypothetical membrane protein; Contains four PepSY-associated transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
  
 0.495
CAZ94320.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (55-128) and the Plug module (144-260) acting as a channel gate; The signal peptide is cleaved between the residues 30 and 31; Family membership.
  
    0.474
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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