STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98483.1Conserved hypothetical protein; Localized in the cytoplasm. (308 aa)    
Predicted Functional Partners:
CAZ94800.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 18 and 19; Localized in the periplasmic space; Conserved hypothetical protein.
 
  
 0.738
CAZ97359.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (22-108) and the Plug module (122-217) acting as a channel gate; The signal peptide is putatively cleaved between the residues 25 and 26; Family membership.
  
     0.662
CAZ96842.1
Integrases are tyrosine recombinases that act by catalyzing the cutting and rejoining of the recombining DNA molecules utilizing a catalytic tyrosine for the strand cleavage. The cleavage of DNA is realized by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue; Contains a C-terminal Phage integrase domain; Belongs to the \phage\ integrase family, Tn4399-type Integrase subfamily; Localized in the cytoplasm; Family membership.
  
  
 0.643
CAZ98484.1
Hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 27 and 28; Localized in the periplasmic space; Hypothetical protein.
       0.600
CAZ97405.1
Transcriptional regulator belonging to the LysR family. Features a N-terminal helix-turn-helix DNA binding domain and a C-terminal LysR-like substrate binding domain. Localized in the cytoplasm; Specificity unclear.
  
  
 0.571
CAZ96555.1
Conserved hypothetical protein; Possible lipoprotein localised in the outer membrane; Sequence signal cleaved between the residues 22 and 23; Contains a von Willebrand factor type A domain.
 
   
 0.506
CAZ94136.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.467
CAZ95462.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
 
 0.435
ybhG
The membrane fusion proteins (MFP) belong to a multidrug efflux pump system that confer the resistance to compounds such as antibiotics, solvents or heavy metals; Proteins of the MFP family function as 'adaptors', connecting a ABC transporters, localized in the cytoplasmic membrane, with a porin or channel localized in outer membrane; The MFP proteins seem to be anchored in the cytoplasmic membrane by a N-terminal transmembrane region; Lipoprotein with a signal peptide cleaved between the residues 19 and 20; Belongs to the type I secretion system; Specificity unclear.
     
 0.420
CAZ97590.1
Polysaccharide lyase, family PL15; Polysaccharide lyase catalyses the eliminative cleavage of polysaccharides containing uronic acids. Belongs to the family 15 of the polysaccharide lyases. Up to now, the only known activity in family PL15 is oligo-alginate lyase (EC 4.2.2.-). Features an uncleaved signal peptide. Localized in the cytoplasmic membrane; Specificity unclear.
 
 
 0.417
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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