STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98509.1ABC transporter, ATPase component; This protein is the nucleotide-binding domain of the ABC transporters (ABC ATPase); Responsible for coupling the energy of ATP hydrolysis to conformational changes in the permease component (ABC membrane); Localized in the cytoplasm near of the cytoplasmic membrane by association with the ABC transporter permease component; Family membership. (209 aa)    
Predicted Functional Partners:
CAZ98508.1
ABC transporter, permease component; ABC (ATP-binding cassette) transporters are responsible for translocation of a variety of compounds across biological membranes; Contains four transmembrane segments; Localized in the cytoplasmic membrane; Family membership.
 
 
 0.976
CAZ98507.1
Hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Hypothetical protein.
 
  
 0.952
macB
Macrolide-specific ABC exporter, permease component; ABC (ATP-binding cassette) membrane domain possibly involved in the macrolides resistance; Contains four transmembrane segments; Belongs to the ABC transporter family; Localized in the cytoplasmic membrane; Family membership.
 
 0.948
CAZ96546.1
ABC exporter, permease component; ABC (ATP-binding cassette) membrane domain (subunit 1) possibly involved in the defense mechanisms by extrusion of a variety of compounds such as antibiotics, heavy metals or solvents across biological membranes; Contains four transmembrane segments; Belongs to the ABC transporter family; Localized in the cytoplasmic membrane; Family membership.
 
 
 0.751
CAZ96542.1
ABC exporter, permease component; ABC (ATP-binding cassette) membrane domain (subunit 1) possibly involved in the defense mechanisms by extrusion of a variety of compounds such as antibiotics, heavy metals or solvents across biological membranes; Contains four transmembrane segments; Belongs to the ABC transporter family; Localized in the cytoplasmic membrane; Family membership.
 
 
 0.734
CAZ98510.1
P47K; The presence of P47K, also known as 47 kDa protein in Pseudomonas chlororaphis B23, is critical for the expression of the nitrile hydratase genes. May stabilize or activate the nitrile hydratase proteins. Features a N-terminal cobW-like nucleotide-binding domain and a cobW-like C-terminal domain. Localized in the cytoplasm; Function unclear.
  
  
 0.730
CAZ96547.1
ABC exporter, permease component; ABC (ATP-binding cassette) membrane domain (subunit 2) possibly involved in the defense mechanisms by extrusion of a variety of compounds such as antibiotics, heavy metals or solvents across biological membranes; Contains four transmembrane segments; Belongs to the ABC transporter family; Localized in the cytoplasmic membrane; Family membership.
 
 
 0.720
CAZ96543.1
ABC exporter, permease component; ABC (ATP-binding cassette) membrane domain (subunit 2) possibly involved in the defense mechanisms by extrusion of a variety of compounds such as antibiotics, heavy metals or solvents across biological membranes; Contains four transmembrane segments; Belongs to the ABC transporter family; Localized in the cytoplasmic membrane; Family membership.
 
 
 0.693
phoA
Alkaline phosphatase is a zinc and magnesium-containing metalloenzyme which hydrolyzes phosphate esters, optimally at high pH; Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymic activity; Signal peptide cleaved between the residues 26 and 27; Localized in the periplasmic space; High confidence in function and specificity.
       0.690
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.593
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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