STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98510.1P47K; The presence of P47K, also known as 47 kDa protein in Pseudomonas chlororaphis B23, is critical for the expression of the nitrile hydratase genes. May stabilize or activate the nitrile hydratase proteins. Features a N-terminal cobW-like nucleotide-binding domain and a cobW-like C-terminal domain. Localized in the cytoplasm; Function unclear. (398 aa)    
Predicted Functional Partners:
CAZ98508.1
ABC transporter, permease component; ABC (ATP-binding cassette) transporters are responsible for translocation of a variety of compounds across biological membranes; Contains four transmembrane segments; Localized in the cytoplasmic membrane; Family membership.
 
     0.757
CAZ98507.1
Hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Hypothetical protein.
  
    0.730
CAZ98509.1
ABC transporter, ATPase component; This protein is the nucleotide-binding domain of the ABC transporters (ABC ATPase); Responsible for coupling the energy of ATP hydrolysis to conformational changes in the permease component (ABC membrane); Localized in the cytoplasm near of the cytoplasmic membrane by association with the ABC transporter permease component; Family membership.
  
  
 0.730
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.699
phoA
Alkaline phosphatase is a zinc and magnesium-containing metalloenzyme which hydrolyzes phosphate esters, optimally at high pH; Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymic activity; Signal peptide cleaved between the residues 26 and 27; Localized in the periplasmic space; High confidence in function and specificity.
       0.621
CAZ95504.1
Protein that belongs to the DksA family, which includes the DnaK suppressor protein (DksA); Contains a 4-cysteine zinc finger in the C-terminal region; Localized in the cytoplasm; Family membership.
  
  
 0.606
rpmB
Ribosomal protein L28 is a part of the large subunit (50S) of the ribosome; RpmB interacts with the proteins RplQ (L17) and RpmF (L32); Belongs to the ribosomal protein L28p family; Localized in the cytoplasm; High confidence in function and specificity.
  
  
 0.590
rpmG
Ribosomal protein L33 is one of the proteins from the large ribosomal subunit (50S); L33 has been shown to be on the surface of 50S subunit; Belongs to the ribosomal protein L33p family; Localized in the cytoplasm; High confidence in function and specificity.
  
  
 0.490
CAZ94457.1
Type I polyketide synthases are modular enzymes involved in the synthesis of various polyketides. This enzyme encompasses five modules: beta-ketoacyl synthase (KS), acyltransferase (AC), dehydratase (DH), enoyl reductase (ER) and acyl carrier protein (ACP). This modular enzyme is homologous to mycocerosic acid synthase (EC 2.3.1.111). Binds 1 phosphopantetheine group covalently. Localized in the cytoplasmic membrane; Specificity unclear.
  
 
 
 0.415
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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