STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98599.1The AraC-type transcriptional regulators are usually involved in the positive regulation of catabolic, metabolic and transport operons; Contains a C-terminal AraC-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a N-terminal domain presumed to interact with effector molecules and may be involved in dimerization; Localized in the cytoplasm; Family membership. (290 aa)    
Predicted Functional Partners:
CAZ98602.1
Conserved hypothetical lipoprotein; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Conserved hypothetical protein.
 
     0.625
ytfG
YtfG belongs to the NmrA-type oxidoreductase family, but its exact function is unknown; Localized in the cytoplasm; Family membership.
 
     0.589
fosB
Metallothiol transferase confers resistance to fosfomycin by catalyzing the addition of a thiol group to fosfomycin. L-cysteine is probably the physiological thiol donor; Forms a homodimer; Binds a magnesium ion as cofactor per subunit; elongs to the Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Localized in the cytoplasm; High confidence in function and specificity.
       0.565
CAZ94916.1
Polysaccharide lyase, family PL9; This protein is modular with a N-terminal domain belonging to the family 9 of the polysaccharide lyases (23-622) and a C-terminal conserved domain of unknown function (661-915). The PL9 domain adopts a right handed parallel beta-helix fold. In contrast to other proteins from the PL9 family, a conserved domain of unknown function is inserted within loops of the beta-helix core (97-271). Such domain insertion in a beta-helix has been observed in the family GH82. Features a signal peptide cleaved between residues 23 and 24. Localized in the periplasm; Spe [...]
  
     0.501
CAZ98597.1
Conserved hypothetical protein; Protein belonging to the DUF1006 family; Localized in the cytoplasm; Family membership.
       0.461
CAZ94992.1
Serine peptidase, family S8; Serine peptidase contains a catalytic triad in the order Asp, His and Ser in the sequence. Its structure consists of three layers with a seven-stranded beta sheet sandwiched between two layers of helices; Belongs to the family S8 of peptidases; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 17 and 18; Localized in the cytoplasmic membrane; Specificity unclear.
  
    0.439
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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