STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98639.1Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 26 and 27; Localized in the periplasmic space; Conserved hypothetical protein. (365 aa)    
Predicted Functional Partners:
CAZ98638.1
Conserved hypothetical membrane protein; Contains a central transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.950
CAZ98637.1
RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership.
 
   0.887
CAZ98635.1
Putative membrane lipoprotein; Lipoprotein signal peptide cleaved between the residues 19 and 20; Putatively localized in the outer membrane; Hypothetical protein.
 
     0.852
CAZ98642.1
Conserved hypothetical lipoprotein; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
    0.781
CAZ94993.1
TPR repeats protein; Conserved protein containing three N-terminal tetratrico peptide repeats (TPRs) and a C-terminal conserved domain of unknown function. TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Contains a C-terminal transmembrane helix; Localized in the cytoplasmic membrane; Function unclear.
  
     0.724
CAZ94995.1
RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership.
  
   0.681
CAZ98636.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (35-114) and the Plug module (130-237) acting as a channel gate; The signal peptide is cleaved between the residues 31 and 32; Family membership.
 
    0.672
CAZ95602.1
Conserved hypothetical protein including an N-terminal region rich in glycine, reminiscent of the collagen triple helix repeats (GxxG); Contains a prokaryotic lipoprotein signal peptide cleavage between the residues 19 and 20; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.662
CAZ95868.1
Hypothetical lpoprotein; Contains a N-terminal region rich in glycine, reminiscent of the collagen triple helix repeats (GxxG); Prokaryotic lipoprotein signal peptide cleaved between the residues 18 and 19; Localized in the outer membrane; Hypothetical protein.
  
     0.644
CAZ95072.1
Glycoside hydrolase, family GH18; Glycoside hydrolase with an unknown substrate specificity. It is a modular enzyme displaying a N-terminal catalytic module belonging to the family 18 of the glycoside hydrolases (GH18) and two C-terminal carbohydrate binding modules belonging to the family 5 of the carbohydrate binding modules that mainly bind to the cellulose and chitin; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the outer membrane; Specificity unclear.
  
   0.640
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.