STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98710.1Conserved hypothetical protein; Localized in the cytoplasm. (147 aa)    
Predicted Functional Partners:
CAZ98711.1
Conserved hypothetical membrane protein; Contains six transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
       0.723
ybgK
Conserved hypothetical protein; Protein that shows some similarities with the uncharacterized YbgK protein from Escherichia coli K12. YbgK and YbgJ Probably are involved in a common metabolism; Contains a Allophanate hydrolase subunit 2 domain; Localized in the cytoplasm.
       0.420
ybgJ
Conserved hypothetical protein; Protein that shows some similarities with the uncharacterized YbgJ protein from Escherichia coli K12. YbgJ and YbgK Probably are involved in a common metabolism; Contains a Allophanate hydrolase subunit 1 domain; Localized in the cytoplasm.
       0.420
CAZ98709.1
LamB family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.420
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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