STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98717.1Conserved hypothetical protein; Localized in the cytoplasm. (315 aa)    
Predicted Functional Partners:
CAZ98718.1
Proteins in the PIN domain family are Localized in the cytoplasm; Function unclear.
       0.778
CAZ98716.1
Serine recombinases perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase; Contains an N-terminal catalytic and dimerization domain (with the conserved serine residue), a central conserved domain usually associated with recombinases and a C-terminal helix-turn-helix DNA-binding domain; Belongs to the site-specific Serine recombinase family; Localized in the cytoplasm; High confidence in function and specificity.
       0.586
gepA
The Genetic Element Protein A is part of a Bacteriophage or a conjugative transposon. Its exact function is unknown; Localized in the cytoplasm; Function unclear.
       0.425
CAZ98720.1
Hypothetical membrane protein; Contains one transmembrane helix; Localized in the cytoplasmic membrane; Hypothetical protein.
       0.425
CAZ98721.1
Putative protein.
       0.422
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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