STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comMComM is induced during competence development. Not needed for DNA uptake. May be involved in a recombination step; Belongs to the Mg-chelatase subunits D/I family, ComM subfamily; Localized in the cytoplasm; High confidence in function and specificity. (282 aa)    
Predicted Functional Partners:
CAZ98713.1
Mg chelatase family protein; Protein displaying similarity with the C-terminal region of Mg chelatase subunit ChlI; Localized in the cytoplasm; Function unclear.
 
     0.976
dprA
The protein Smf (or DprA) would be a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation; Localized in the cytoplasm; High confidence in function and specificity.
 
 0.826
CAZ95478.1
Phosphoribosyltransferase carries out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate, an activated form of ribose-5-phosphate. Its exact specificity is still unknown; Localized in the cytoplasm; Function unclear.
 
  
 0.798
CAZ95245.1
Competence proteins are essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. This competence protein features eleven transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
 
  
 0.774
CAZ96259.1
Conserved hypothetical protein belonging to the UPF0102 family. localized in the cytoplasm.
 
  
 0.720
CAZ98733.1
Conserved hypothetical protein belonging to the DUF159 family; Localized in the cytoplasm; Belongs to the SOS response-associated peptidase family.
       0.623
quiP
Acyl-homoserine lactone acylase, family S45; Acyl-homoserine lactone acylase catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid; Belongs to the family 45 of the serine peptidases (45); Signal peptide cleaved between the residues 26 and 27; Localized in the periplasmic space; High confidence in function and specificity.
       0.621
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
   
 0.602
CAZ98732.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.537
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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