STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98739.1Putative protein. (74 aa)    
Predicted Functional Partners:
CAZ98741.1
Conserved hypothetical membrane protein; Contains eight transmembrane helice; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
       0.732
CAZ98740.1
FMN_red domain-containing protein; Unnamed protein product; Flavoprotein belonging to the NADPH-dependent FMN reductase family. Its specificity is unclear; Localized in the cytoplasm; Specificity unclear.
       0.572
CAZ98738.1
Anthranilate synthase component I-like protein; Enzyme that contains a C-terminal chorismate binding domain and belonging to the anthranilate synthase component I family; Localized in the cytoplasm; Family membership.
       0.568
dsbD
Thiol:disulfide interchange protein; DsbD, also known as protein-disulfide reductase, is required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps; Uses NAD(P) as cofactor; Contains eight transmembrane helices; Localized in the cytoplasmic membrane; High confidence in function and specificity.
       0.445
tilS
tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.445
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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