STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98770.1Protein belonging to the OmpA family. OmpA-like domains are thought to be responsible for non-covalent interactions with peptidoglycan; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 16 and 17; Localized in the outer membrane; Family membership. (420 aa)    
Predicted Functional Partners:
CAZ98769.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 28 and 29; Localized in the periplasmic space; Conserved hypothetical protein.
 
     0.807
CAZ96561.1
Conserved hypothetical protein; Signal peptide cleaved between the residues 28 and 29; Localized in the periplasm.
  
     0.762
CAZ94710.1
Conserved hypothetical protein; Contains a signal peptide cleaved between the residues 29 and 30; Localized in the periplasmic space.
  
     0.756
CAZ94703.1
Conserved hypothetical protein; Contains a signal peptide cleaved between the residues 29 and 30; Localized in the periplasmic space.
  
     0.748
CAZ97041.1
Conserved hypothetical membrane protein; Contains an uncleavable signal sequence; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.743
CAZ97786.1
Conserved hypothetical protein; Signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space.
  
     0.743
CAZ97043.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.739
CAZ97789.1
Conserved hypothetical membrane protein; Contains an uncleavable signal peptide. Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.734
CAZ97811.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein.
  
   
 0.700
CAZ96130.1
Conserved hypothetical protein; Contains an uncleavable signal sequence; Localized in the cytoplasmic membrane.
  
     0.694
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.