STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqfFConserved hypothetical protein; This protein is a putative receptor with a N-terminal extracellular domain, a central membrane domain and a C-terminal metal-dependent phosphohydrolase domain. Its exact function is unknown; Contains a N-terminal transmembrane helix and seven transmembrane helices in the central region; Localized in the cytoplamic membrane; Function unclear. (682 aa)    
Predicted Functional Partners:
CAZ98896.1
Conserved hypothetical protein. Localized in the cytoplasm.
 
  
 0.763
CAZ94147.1
Conserved hypothetical membrane protein; Contains two transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.627
dacA
DUF147 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.603
thlA
Acetyl-CoA acetyltransferase is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or mevalonate biogenesis. Localized in the cytoplasm; High confidence in function and specificity; Belongs to the thiolase-like superfamily. Thiolase family.
       0.591
CAZ94537.1
Dipeptidyl peptidase, family C40; Dipeptidyl peptidase hydrolyzes gamma-D-Glu-L-(meso)A2pm linkages only in those peptide units that have a free N-terminal L-alanine. It is involved in peptidoglycan metabolism. Belongs to the family 40 of the cysteine peptidases. These peptidases contain single conserved cysteine and histidine residues that form a putative catalytic dyad in the order Cys, His. Features also a bacterial SH3 domain in the N-terminal region; High confidence in function and specificity.
  
    0.533
CAZ94092.1
Conserved hypothetical protein. Features a signal peptide cleaved between the residues 21 and 22. Localized in the periplasm.
  
     0.517
CAZ95984.1
This integral membrane protein is distantly related with phosphate-sodium symporter. Contains eleven transmembrane helices; Localized in the cytoplasmic memnbrane; Family membership.
  
     0.482
batE
The protein BatE is a membrane protein belonging to the Bat operon (Bacteroides aerotolerance). Its exact function is unknown; Contains two N-terminal Tetratricopeptide repeats, two central transmembrane helices and a C-terminal bacterial SH3 domain; Localized in the cytoplasmic membrane; Function unclear.
  
 
   0.479
CAZ96618.1
Conserved hypothetical membrane protein; Contains nine transmembrane segments; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.456
CAZ95254.1
TPR repeats protein; Conserved protein containing three tetratrico peptide repeats (TPRs). TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Family membership.
  
 
   0.435
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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