STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94537.1Dipeptidyl peptidase, family C40; Dipeptidyl peptidase hydrolyzes gamma-D-Glu-L-(meso)A2pm linkages only in those peptide units that have a free N-terminal L-alanine. It is involved in peptidoglycan metabolism. Belongs to the family 40 of the cysteine peptidases. These peptidases contain single conserved cysteine and histidine residues that form a putative catalytic dyad in the order Cys, His. Features also a bacterial SH3 domain in the N-terminal region; High confidence in function and specificity. (250 aa)    
Predicted Functional Partners:
CAZ94473.1
Peptidase, family C40; Cysteine peptidase belonging to the family C40. Its exact function is not known. C40 peptidases contain single conserved cysteine and histidine residues that form a catalytic dyad in the order Cys, His. Features a prokaryotic lipoprotein signal peptide cleaved between the residues 27 and 28; Localized in the outer membrane; Specificity unclear.
  
     0.745
thlA
Acetyl-CoA acetyltransferase is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or mevalonate biogenesis. Localized in the cytoplasm; High confidence in function and specificity; Belongs to the thiolase-like superfamily. Thiolase family.
       0.724
sprA
Peptidase spr, family C40; The lipoprotein sprA was identified by genetic as a suppressor of a protease prc mutation. Its exact function is not known. The catalytic dyad is formed by a single conserved cysteine and histidine residues; Belongs to the family C40 of peptidases; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 34 and 35; Localized in the cytoplasmic or outer membrane; Specificity unclear.
  
     0.708
yqfF
Conserved hypothetical protein; This protein is a putative receptor with a N-terminal extracellular domain, a central membrane domain and a C-terminal metal-dependent phosphohydrolase domain. Its exact function is unknown; Contains a N-terminal transmembrane helix and seven transmembrane helices in the central region; Localized in the cytoplamic membrane; Function unclear.
  
    0.533
CAZ97282.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.511
CAZ97816.1
tRNA/rRNA methyltransferase; Catalyzes the site-specific methylation of the 2' hydroxy group of the ribose in rRNA or tRNA, using the S-AdoMet; Contains a N-terminal RNA 2'-O ribose methyltransferase substrate binding domain and a C-terminal catalytic domain also involved in the dimer formation that adopts an alpha/beta knot fold; Belongs to the RNA methyltransferase TrmH family; Localized in the cytoplasm; Family membership.
 
     0.425
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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