STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98800.1IclR-type transcriptional regulators display a Helix-Turn-Helix motif at the N-terminus. Localized in the cytoplasm; Specificity unclear. (263 aa)    
Predicted Functional Partners:
ybgJ
Conserved hypothetical protein; Protein that shows some similarities with the uncharacterized YbgJ protein from Escherichia coli K12. YbgJ and YbgK Probably are involved in a common metabolism; Contains a Allophanate hydrolase subunit 1 domain; Localized in the cytoplasm.
  
    0.706
ybgK
Conserved hypothetical protein; Protein that shows some similarities with the uncharacterized YbgK protein from Escherichia coli K12. YbgK and YbgJ Probably are involved in a common metabolism; Contains a Allophanate hydrolase subunit 2 domain; Localized in the cytoplasm.
  
    0.683
CAZ94391.1
Gluconolactonase or Aldonolactonase hydrolyzes the glyconolactones formed by oxidoreductases acting on various aldohexosaccharides. It hydrolyzes the D-glucono-1,5-lactone to gluconic acid and can act on a wide range of hexono-1,5-lactones; Localized in the cytoplasm; High confidence in function and specificity.
      0.649
CAZ98801.1
Conserved hypothetical membrane protein; Contains a N-terminal transmembrane segement followed by three tetratricopeptide repeats (TPR) and a C-terminal LuxR-type HTH domain. Between the TPR and HTH domains a second transmembrane segement is present; This Protein could interact with the DNA (transcriptional control or transcription factor); Probably localized in the cytoplasmic membrane; Conserved hypothetical protein.
     
 0.549
CAZ98802.1
Hypothetical protein; Sequence that displays some similarities with the C-terminal end of several paralogous proteins; Putatively localized in the cytoplasm.
       0.533
CAZ97750.1
Possible FAD dependent oxidoreductase; Contains a C-terminal flavoprotein domain (206 to 593); Belongs to the FAD/NAD(P)-binding Rossmann fold Superfamily, pyridine nucleotide-disulfide oxidoreductase family; Signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Family membership.
 
     0.451
CAZ98799.1
The AraC-type transcriptional regulators are usually involved in the positive regulation of catabolic, metabolic and transport operons; Contains a C-terminal AraC-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a N-terminal domain presumed to interact with effector molecules and may be involved in dimerization; Localized in the cytoplasm; Family membership.
  
  
 0.442
CAZ98709.1
LamB family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.430
CAZ95110.1
Transcriptional regulator involved in the repression and/or the positive regulation of genes encoding for enzymes; Contains an N-terminal HTH domain of GntR-like bacterial transcriptional regulators, involved in the binding of the protein to the operator sequences in the DNA and a C-terminal FCD domain that probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N- terminal DNA-binding domain (HTH domain); Localized in the cytoplasm; Family membership.
 
  
 0.400
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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