STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ98849.1Conserved hypothetical periplasmic protein; Protein belonging to the DUF1080 family; Signal peptide cleaved between the residues 24 and 25; Localized in the periplasmic space; Hypothetical protein. (313 aa)    
Predicted Functional Partners:
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.629
CAZ95737.1
Conserved hypothetical lipoprotein; Contains a domain of unknown function (DUF1080) that may adopt a concavalin-like or glucanase-like fold; Prokaryotic lipoprotein signal peptide cleaved between the residues 17 and 18; Localized in the outer membrane; Conserved hypothetical protein.
 
     0.615
CAZ98850.1
NAD(P)-dependent dehydrogenase; Belongs to the Rossmann fold family; Contains a twin-arginine translocation signal peptide; Localized in the periplasmic space; Specificity unclear.
 
     0.593
CAZ97259.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 25 and 26; Putatively localized in the outer membrane; Family membership.
  
     0.545
CAZ97258.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (34-108) and the Plug module (124-231) acting as a channel gate; The signal peptide is cleaved between the residues 30 and 31; Family membership.
  
    0.477
CAZ95190.1
Modular protein with a N-terminal cytochrome C Planctomycetes specific, and two domains of unknown function (DUF1549 and DUF1553) always associated with the Planctomycete cytochrome C domain. Cytochromes C typically function in electron transfer, but c-type cytochrome centers are also found in the active sites of many enzymes; This protein could result of a lateral transfer from a Planctomycetes; Contains an uncleavable signal peptide; Localized in the cytoplasmic membrane; Function unclear.
  
     0.476
CAZ95189.1
Conserved hypothetical protein belonging to the DUF1501 family, in the alkaline-phosphatase clan; Contains a twin-arginine signal peptide; Localized in the periplasmic space.
  
     0.475
CAZ97261.1
NAD(P)-dependent dehydrogenase that belongs to the Rossmann fold family; Contains a twin-arginine translocation signal peptide; Localized in the periplasmic space; Specificity unclear.
 
     0.470
CAZ98324.1
Conserved hypothetical periplasmic protein; Protein belonging to the DUF1080 family; Signal peptide cleaved between the residues 30 and 31; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.470
CAZ94249.1
Conserved hypothetical periplasmic protein; Protein containing a domain of unknown function DUF1501; Belongs to the alkaline-phosphatase clan; Contains a twin-arginine signal peptide; Localized in the periplasmic space; Family membership.
  
     0.460
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.