STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaEtRNA-(ms[2]io[6]A)-hydroxylase; MiaE is involved in the production of the modified nucleoside 2-methylthio-cis-ribozeatin (MS[2]IO[6]A) found in some tRNAs. Catalyzes the oxygen-dependent transformation of MS[2]I[6]A into MS[2]IO[6]A. Localized in the cytoplasm; High confidence in function and specificity. (193 aa)    
Predicted Functional Partners:
CAZ94565.1
Conserved protein belonging to the UbiA prenyltransferase family, which includes various prenyltransferases, but also cytochrome C oxidase assembly factor. The exact function of this protein is unclear; Contains nine transmembrane helices. Localized in the cytoplasmic membrane; Family membership.
       0.508
CAZ94566.1
TatD family protein; Conserved protein belonging to the TatD family. These enzymes adopt a TIM barrel fold; Localized in the cytoplasm; Family membership.
       0.508
CAZ94567.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.508
CAZ94561.1
Conserved hypothetical membrane protein; Contains four transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
       0.444
CAZ94562.1
Type I phosphodiesterase catalyzes the cleavage of phosphodiester and phosphosulfate bonds in various substrates such as NAD, deoxynucleotides and nucleotide sugars. The exact specificity of this enzyme is not known; Localized in the cytoplasm; Family membership.
       0.444
CAZ94563.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.444
aroB1
3-Dehydroquinate synthase is involved in the biosynthesis of aromatic amino acids. It catalyzes the second step of the shikimate pathway, the formation of dehydroquinate and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. It forms a monomer and binds NAD and divalent metal cation as cofactors. Localized in the cytoplasm; High confidence in function and specificity.
       0.444
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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