STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaUProtein YgaU, family CBM50; Protein YgaU contains a C-terminal peptidoglycan-binding LysM domain. LysM domains belongs to the family 50 of the carbohydrate binding modules (CBM50). Localized in the cytoplasm; Family membership. (126 aa)    
Predicted Functional Partners:
CAZ98185.1
Conserved hypothetical protein belonging to the DUF1508 family; Localized in the cytoplasm.
  
   0.962
CAZ94479.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
   0.932
CAZ98305.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein.
   
  
 0.851
otsAB
Trehalose-6-phosphate synthase/phosphatase, family GT20; This enzyme is involved in the biosynthesis of trehalose. It is a fusion protein between the trehalose-6-phosphate synthase (OtsA) and the trehalose-6-phosphate phosphatase (OtsB). Trehalose-6-phosphate synthase catalyzes the reaction: UDP-glucose + D-glucose 6-phosphate = UDP + alpha,alpha-trehalose 6-phosphate. It belongs to the family 20 of the glycosyltransferases (GT20). trehalose-6-phosphate phosphatase catalyzes the reaction: trehalose 6-phosphate + H2O = trehalose + phosphate. Localized in the cytoplasm; High confidence i [...]
   
  
 0.798
CAZ98249.1
Conserved hypothetical protein; Localized in the cytoplasm.
 
     0.530
CAZ98117.1
Conserved hypothetical membrane protein; Contains a putative lipoprotein signal peptide cleaved between the residues 23 and 24; Possibly localized in the outer membrane; Conserved hypothetical protein.
  
     0.474
rpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
       0.441
hisB
Histidine biosynthesis bifunctional protein HisB; HisB is a bifunctional enzyme containing a N-terminal histidinol-phosphatase (HP) domain and a C-terminal imidazoleglycerol-phosphate dehydratase (IGPD) domain, catalyzing the eighth and sixth steps of L-histidine biosynthetic pathway, respectively. HP catalyzes the dephosphorylation of L-histidinol phosphate. HP forms a homodimer in solution. The active site contains two metal binding sites. IGPD catalyzes the reaction: D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H2O. IGPD is a metalloenz [...]
  
    0.435
CAZ94365.1
This protein belongs to a family including the Fic protein (filamentation induced by cAMP). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. Localized in the cytoplasm; Family membership.
   
    0.432
katA2
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.428
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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