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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94619.1Conserved hypothetical protein; Localized in the cytoplasm. (171 aa)    
Predicted Functional Partners:
CAZ94618.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Conserved hypothetical protein.
       0.689
CAZ98032.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 17 and 18; Probably localized in the cytoplasmic membrane; Family membership.
  
     0.580
CAZ98073.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 17 and 18; Localized in the outer membrane; Family membership.
  
     0.547
CAZ94620.1
Conserved hypothetical protein; Localized in the cytoplasm.
       0.522
CAZ98125.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 22 and 23; Probably localized in the cytoplasmic membrane; Family membership.
  
     0.490
CAZ94621.1
Cytochrome c-containing protein; Protein containing a N-terminal beta-propeller fold domain, three central PBS lyase HEAT-like repeats and a C-terminal cytochrome c domain. Cytochromes c typically function in electron transfer, but c-type cytochrome centers are also found in the active sites of many enzymes. Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 22 and 23; Localized in the outer membrane; Function unclear.
 
     0.470
CAZ96164.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 19 and 20; Putatively localized in the outer membrane; Family membership.
  
     0.468
CAZ98031.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (here possibly sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (26-98) and the Plug module (114-224) acting as a channel gate; The signal peptide is cleaved between the residues 24 and 25; Family membership.
  
     0.466
CAZ98084.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Contains a lipoprotein signal peptide cleaved between the residues 16 and 17; Probably localized in the outer membrane; Family membership.
  
     0.447
CAZ98909.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.444
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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